Detailed information NTG1096427

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACMXYX_RS14600
• Genome accession: NZ_CP180547
• Coordinates: 3201675..3202847 (+)
• Length: 390 a.a.
• NCBI ID: WP_415906184.1
• Uniprot ID: -
• Organism: Neptuniibacter sp. QD72_48
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3196675..3207847

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMXYX_RS14580 (ACMXYX_14580)	-	3197968..3198738 (-)	771	WP_415906182.1	metal ABC transporter permease	-
ACMXYX_RS14585 (ACMXYX_14585)	-	3198738..3199637 (-)	900	WP_415896949.1	metal ABC transporter substrate-binding protein	-
ACMXYX_RS14590 (ACMXYX_14590)	-	3199618..3200754 (-)	1137	WP_415896950.1	hypothetical protein	-
ACMXYX_RS14595 (ACMXYX_14595)	-	3200870..3201523 (-)	654	WP_415906183.1	DUF1826 domain-containing protein	-
ACMXYX_RS14600 (ACMXYX_14600)	pilU	3201675..3202847 (+)	1173	WP_415906184.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACMXYX_RS14605 (ACMXYX_14605)	-	3203054..3203437 (+)	384	WP_415906185.1	hypothetical protein	-
ACMXYX_RS14610 (ACMXYX_14610)	-	3203603..3204466 (+)	864	WP_415906186.1	hypothetical protein	-
ACMXYX_RS14615 (ACMXYX_14615)	fadA	3204711..3205886 (-)	1176	WP_415895155.1	acetyl-CoA C-acyltransferase FadA	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43541.70 Da
• Isoelectric Point: 5.3532

>NTDB_id=1096427 ACMXYX_RS14600 WP_415906184.1 3201675..3202847(+) (pilU) [Neptuniibacter sp. QD72_48]
MEFKDYLTILAKRDGSDLYLTTGAPPCAKFEGKLTPLSKEPYKPGEIEAIANSLMDEQQRATFEEELEMNLAYSIPKVAR
YRINIFKQRNQYSLVARNIKADIPKMEDLGLPPVLKDVIMEKRGLVLFVGATGSGKSTSLAALIDHRNRNSGGHIITIED
PIEFVHNHRKSLINQREVGVDTRNFHSALKNALRQAPDVILIGEIRDQETMEQCLTYAETGHLAISTLHANNANQAIDRI
INFFPQARHKQIFHDLALNLKAVVSQRLIPTIEGKRCAAIEILLGTSSIQELIMKGDVKGIKEVMSKGSDTTGMQTFDDS
LFKLFDEGKITQDQAIINADSANDMRLRMNLAVVDNKAEKTDAAPEPEKQSFDEDNPLAGIKLLDEDEEV

Nucleotide

• Length: 1173 bp

>NTDB_id=1096427 ACMXYX_RS14600 WP_415906184.1 3201675..3202847(+) (pilU) [Neptuniibacter sp. QD72_48]
ATGGAATTTAAGGATTACCTTACAATTTTGGCGAAACGTGATGGCTCCGACCTCTACCTCACTACCGGAGCCCCACCCTG
TGCAAAGTTCGAAGGTAAATTAACACCATTAAGCAAAGAGCCTTATAAACCTGGAGAGATCGAAGCGATTGCGAATTCCT
TAATGGACGAGCAGCAACGCGCTACCTTCGAAGAAGAGCTAGAGATGAACCTCGCTTACTCCATCCCTAAAGTGGCTCGT
TATCGAATCAATATCTTTAAACAACGTAACCAATACTCACTAGTCGCGCGTAATATCAAAGCAGATATTCCTAAAATGGA
AGACTTAGGCCTACCCCCCGTCCTTAAAGATGTGATTATGGAGAAACGTGGACTAGTCCTGTTTGTGGGTGCGACAGGTT
CGGGTAAATCAACATCGCTTGCGGCACTGATTGATCACCGTAACCGTAATAGCGGCGGTCATATCATCACCATCGAAGAC
CCAATCGAGTTTGTCCACAACCACCGAAAATCACTGATCAACCAACGAGAAGTCGGGGTTGATACTCGTAACTTCCATAG
CGCTCTGAAAAACGCCCTGCGCCAAGCGCCGGATGTAATTCTGATTGGTGAGATTCGAGATCAGGAAACCATGGAACAGT
GCCTGACCTATGCAGAAACCGGCCACTTAGCAATCTCAACTCTGCACGCGAACAACGCTAACCAAGCGATTGATCGTATT
ATTAACTTCTTTCCACAAGCACGACATAAACAGATCTTCCACGACCTTGCGCTTAACCTCAAAGCCGTGGTTTCTCAGCG
TCTAATCCCAACCATTGAAGGTAAACGTTGCGCTGCCATTGAGATACTTCTAGGTACTTCCAGTATCCAAGAACTGATCA
TGAAAGGCGATGTAAAAGGGATCAAAGAGGTAATGTCTAAGGGTTCTGATACCACTGGCATGCAAACCTTTGATGACTCC
CTGTTCAAACTCTTTGACGAAGGTAAGATCACGCAAGACCAAGCAATTATTAATGCCGACTCTGCAAACGATATGCGCCT
TCGAATGAACCTAGCAGTTGTTGATAATAAAGCAGAAAAAACCGATGCAGCGCCTGAACCTGAAAAACAGTCTTTCGATG
AAGACAATCCGCTAGCTGGCATTAAGCTATTGGATGAAGACGAAGAGGTTTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (113-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	53.541	90.513	0.485
pilU	Acinetobacter baylyi ADP1	51.253	92.051	0.472
pilU	Vibrio cholerae strain A1552	46.286	89.744	0.415
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.507	94.103	0.4
pilT	Pseudomonas aeruginosa PAK	42.687	85.897	0.367
pilT	Pseudomonas stutzeri DSM 10701	42.09	85.897	0.362