Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   ACGHT2_RS05605 Genome accession   NZ_AP031455
Coordinates   1061997..1062671 (-) Length   224 a.a.
NCBI ID   WP_013851854.1    Uniprot ID   A0AAW6YDN2
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056997..1067671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS05580 (K460107A9_10170) deoC 1057479..1058141 (-) 663 WP_013851852.1 deoxyribose-phosphate aldolase -
  ACGHT2_RS05585 (K460107A9_10180) - 1058597..1059190 (-) 594 WP_058692317.1 class I SAM-dependent methyltransferase -
  ACGHT2_RS05590 (K460107A9_10190) coaA 1059305..1060225 (+) 921 WP_048791039.1 type I pantothenate kinase -
  ACGHT2_RS05595 (K460107A9_10200) rpsT 1060300..1060551 (+) 252 WP_003064878.1 30S ribosomal protein S20 -
  ACGHT2_RS05600 (K460107A9_10210) ciaH 1060667..1062007 (-) 1341 WP_003064880.1 cell wall metabolism sensor histidine kinase WalK Regulator
  ACGHT2_RS05605 (K460107A9_10220) ciaR 1061997..1062671 (-) 675 WP_013851854.1 response regulator transcription factor Regulator
  ACGHT2_RS05610 (K460107A9_10230) - 1062864..1065407 (-) 2544 WP_058692292.1 M1 family metallopeptidase -
  ACGHT2_RS05615 (K460107A9_10240) phoU 1065630..1066283 (-) 654 WP_003064885.1 phosphate signaling complex protein PhoU -
  ACGHT2_RS05620 (K460107A9_10250) pstB 1066315..1067073 (-) 759 WP_003064887.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25427.14 Da        Isoelectric Point: 4.3831

>NTDB_id=109616 ACGHT2_RS05605 WP_013851854.1 1061997..1062671(-) (ciaR) [Streptococcus pasteurianus strain k46-0107-A9]
MIKILLVEDDLSLSNSIFDFLDDFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDGFQVLKELREKSVSTPVLIMTA
KESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFSDNNLSYGELTVTTSTNTTTINGKEVEMLGKEFDLLVY
FLQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTTFAKNLQTLRSVGYILKNAE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=109616 ACGHT2_RS05605 WP_013851854.1 1061997..1062671(-) (ciaR) [Streptococcus pasteurianus strain k46-0107-A9]
ATGATTAAAATATTATTAGTAGAAGACGATTTGAGTTTATCTAATTCCATTTTTGATTTTTTAGACGATTTTGCTGATGT
AATGCAAGTGTTTGATGGCGAGGAAGGTTTGTATGAAGCAGAGAGTGGTGTATATGACCTTATTCTACTTGACCTAATGT
TACCTGAGAAAGATGGCTTCCAGGTTCTAAAAGAATTACGAGAAAAGTCTGTATCAACACCTGTACTTATTATGACTGCG
AAAGAAAGCCTCGACGATAAAGGACATGGATTTGAGTTGGGAGCTGATGATTATTTAACTAAACCCTTTTACCTTGAGGA
ATTAAAAATGCGTATCCAAGCTCTTTTGAAACGTTCTGGTAAGTTTAGTGATAATAATTTGTCTTATGGAGAGCTAACTG
TTACTACTTCTACTAATACAACAACTATTAATGGTAAAGAAGTGGAAATGCTTGGTAAAGAATTTGACTTGTTGGTTTAT
TTCTTACAAAATCAAAATGTTATTTTACCAAAATCACAAATTTTTGATCGTATTTGGGGCTTTGATAGTGATACAACGAT
TTCGGTTGTTGAGGTTTACGTTTCAAAAATTCGAAAAAAACTTAAAGGCACTACTTTTGCTAAAAACCTTCAGACCCTAC
GGAGTGTAGGTTATATTCTGAAAAATGCTGAATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-220)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

92.377

99.554

0.92
  ciaR Streptococcus pneumoniae Rx1

86.161

100

0.862
  ciaR Streptococcus pneumoniae D39

86.161

100

0.862
  ciaR Streptococcus pneumoniae R6

86.161

100

0.862
  ciaR Streptococcus pneumoniae TIGR4

86.161

100

0.862
  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.667

100

0.388
  vicR Streptococcus mutans UA159

35.47

100

0.371
  micA Streptococcus pneumoniae Cp1015

35.622

100

0.371

Multiple sequence alignment