Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACGHT2_RS02470 Genome accession   NZ_AP031455
Coordinates   447943..448605 (+) Length   220 a.a.
NCBI ID   WP_058692758.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442943..453605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS02445 (K460107A9_04180) - 443061..444461 (+) 1401 WP_069789204.1 Cof-type HAD-IIB family hydrolase -
  ACGHT2_RS02450 (K460107A9_04190) - 444461..444817 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  ACGHT2_RS02455 (K460107A9_04200) cysK 444930..445859 (-) 930 WP_013851529.1 cysteine synthase A -
  ACGHT2_RS02460 (K460107A9_04210) - 445963..446589 (-) 627 WP_013851530.1 YigZ family protein -
  ACGHT2_RS02465 (K460107A9_04220) comFA/cflA 446645..447946 (+) 1302 WP_069789203.1 DEAD/DEAH box helicase Machinery gene
  ACGHT2_RS02470 (K460107A9_04230) comFC/cflB 447943..448605 (+) 663 WP_058692758.1 ComF family protein Machinery gene
  ACGHT2_RS02475 (K460107A9_04240) hpf 448681..449229 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACGHT2_RS02480 - 449364..450037 (+) 674 Protein_429 transposase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25577.69 Da        Isoelectric Point: 9.1814

>NTDB_id=109605 ACGHT2_RS02470 WP_058692758.1 447943..448605(+) (comFC/cflB) [Streptococcus pasteurianus strain k46-0107-A9]
MICLLCGQEFSKKEQFLNLILMKKDDNGVCLECQKTFERIGDVHCPTCCRTGFSQQCPDCQAWEKQHHHVSHEALFTYNS
SMKDYFSKYKFQGDILLSHVFSKEIKQALKKYKNYTFVPVPISPKRLKERQFNQVTALLQAAKIPYEDLLIKREISKQSD
KTRKERLETLNPFSLKNVSKVPENVLIIDDIYTTGATLKGIYQLFYETGAKNVKSFTIVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=109605 ACGHT2_RS02470 WP_058692758.1 447943..448605(+) (comFC/cflB) [Streptococcus pasteurianus strain k46-0107-A9]
ATGATTTGCCTGCTCTGCGGACAAGAATTTTCCAAAAAAGAACAATTTTTAAACCTTATCTTAATGAAAAAAGATGACAA
TGGCGTGTGTCTGGAGTGTCAAAAAACATTTGAAAGAATAGGAGATGTTCATTGCCCAACCTGCTGCCGAACTGGATTTT
CTCAGCAATGTCCAGATTGTCAAGCGTGGGAAAAACAACATCATCACGTATCTCATGAAGCGCTTTTTACCTACAATTCT
TCAATGAAAGATTATTTCTCAAAATATAAATTTCAAGGAGATATTCTTTTAAGTCACGTTTTTTCAAAAGAAATCAAACA
AGCATTAAAAAAATATAAAAACTACACCTTTGTTCCAGTTCCCATAAGTCCAAAACGGCTAAAAGAAAGACAATTTAACC
AAGTAACAGCACTTTTACAAGCAGCTAAAATCCCCTACGAAGACTTACTAATCAAGAGAGAAATCAGTAAACAGTCCGAT
AAAACACGAAAAGAGCGCCTAGAAACTCTCAATCCTTTTTCTTTAAAAAATGTTTCAAAGGTGCCAGAAAATGTCTTGAT
TATCGATGATATTTACACAACTGGCGCCACTTTAAAGGGAATATATCAACTTTTCTATGAAACTGGAGCCAAAAATGTAA
AAAGTTTTACGATTGTGCGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

51.364

100

0.514
  comFC/cflB Streptococcus pneumoniae TIGR4

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae Rx1

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae D39

50.909

100

0.509
  comFC/cflB Streptococcus pneumoniae R6

50.909

100

0.509
  comFC/cflB Streptococcus mitis SK321

50

100

0.5
  comFC Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.364

Multiple sequence alignment