Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   ACGHT2_RS02465 Genome accession   NZ_AP031455
Coordinates   446645..447946 (+) Length   433 a.a.
NCBI ID   WP_069789203.1    Uniprot ID   -
Organism   Streptococcus pasteurianus strain k46-0107-A9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441645..452946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHT2_RS02440 (K460107A9_04170) - 442299..442943 (+) 645 WP_013851527.1 response regulator transcription factor -
  ACGHT2_RS02445 (K460107A9_04180) - 443061..444461 (+) 1401 WP_069789204.1 Cof-type HAD-IIB family hydrolase -
  ACGHT2_RS02450 (K460107A9_04190) - 444461..444817 (+) 357 WP_003063541.1 S1 RNA-binding domain-containing protein -
  ACGHT2_RS02455 (K460107A9_04200) cysK 444930..445859 (-) 930 WP_013851529.1 cysteine synthase A -
  ACGHT2_RS02460 (K460107A9_04210) - 445963..446589 (-) 627 WP_013851530.1 YigZ family protein -
  ACGHT2_RS02465 (K460107A9_04220) comFA/cflA 446645..447946 (+) 1302 WP_069789203.1 DEAD/DEAH box helicase Machinery gene
  ACGHT2_RS02470 (K460107A9_04230) comFC/cflB 447943..448605 (+) 663 WP_058692758.1 ComF family protein Machinery gene
  ACGHT2_RS02475 (K460107A9_04240) hpf 448681..449229 (+) 549 WP_003063557.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACGHT2_RS02480 - 449364..450037 (+) 674 Protein_429 transposase -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 49397.56 Da        Isoelectric Point: 10.1065

>NTDB_id=109604 ACGHT2_RS02465 WP_069789203.1 446645..447946(+) (comFA/cflA) [Streptococcus pasteurianus strain k46-0107-A9]
MDKLNNYYGRLFTQAQLSDALKKQAKQLPAMTKLNHHYICNRCGSQVSLQNKLQTNVFYCRNCLVFGRNTSNGHLYYFPQ
RRFSKKDSLIWKGKLTPYQDDVSKGMLEGIDAKKDLLIHAVTGAGKTEMIYQSVSKIIDDGGCVCLASPRIDVCLELYKR
LSRNFSCLITLLHGDSEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNAVLYHAVDRAIKPNRTKIFLTATST
DELDKKVKTGTLTKLHLARRFHANPLVVPQKIWLSGVLSNMQKKKIPQKLINLIKKQRQTHYPLLIFFPNIEQGEAFTQI
LQTYFSEEQIAFVSSKTENRLDIVEKFRRQELSILVTTTILERGVTFPCVDVFVLLSNHRLYTKSTLVQISGRVGRAAER
PTGELLFLHDGSTKEMRKAIAEIKAMNKKGGFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=109604 ACGHT2_RS02465 WP_069789203.1 446645..447946(+) (comFA/cflA) [Streptococcus pasteurianus strain k46-0107-A9]
ATGGATAAACTGAATAATTATTATGGAAGACTATTTACACAAGCTCAACTTTCGGATGCCTTAAAAAAGCAGGCTAAACA
GTTGCCGGCAATGACAAAATTAAATCATCATTATATCTGTAATCGTTGTGGTAGTCAAGTGTCTTTACAAAATAAACTTC
AAACAAACGTTTTTTATTGTCGAAATTGCCTTGTTTTTGGAAGAAATACGAGTAATGGACATCTCTATTATTTTCCACAA
AGACGTTTTTCTAAAAAAGATTCTCTTATTTGGAAAGGAAAATTGACCCCTTACCAAGATGATGTTTCAAAAGGGATGTT
AGAAGGCATTGATGCTAAGAAAGACCTACTTATTCATGCTGTTACAGGTGCTGGAAAAACAGAAATGATTTACCAATCTG
TATCCAAAATAATTGATGACGGTGGTTGTGTTTGCCTAGCAAGTCCGCGAATTGATGTTTGTCTGGAGCTTTATAAACGC
TTGTCACGTAATTTTTCGTGTCTGATTACATTGCTTCATGGAGATTCTGAGCCCTACAAACGTGCCCCTTTAATCATTGC
CACAACACATCAACTTTTAAAATTTTACCAAGCTTTTGATTTGTTAATTATTGATGAAGTTGATGCCTTTCCATTTGTGG
ATAATGCCGTGCTTTACCATGCTGTTGATAGAGCTATCAAACCTAATAGAACCAAGATTTTTTTAACAGCGACATCAACA
GATGAATTAGATAAAAAAGTAAAAACAGGAACTCTGACTAAATTGCACCTTGCTCGACGATTTCATGCCAATCCATTAGT
TGTGCCACAAAAAATCTGGTTGTCTGGCGTTTTATCCAATATGCAAAAGAAGAAAATTCCCCAGAAATTAATAAATCTTA
TAAAAAAACAACGTCAAACCCACTATCCTTTGCTAATTTTCTTCCCAAATATCGAACAAGGAGAAGCCTTTACTCAAATT
TTACAGACCTATTTTTCAGAAGAACAAATCGCTTTTGTGTCTAGTAAAACAGAAAATCGCTTAGACATTGTAGAAAAATT
TAGGAGACAAGAACTTTCTATTTTGGTGACAACAACCATTTTAGAACGTGGTGTCACTTTCCCTTGTGTAGATGTCTTTG
TATTGCTTTCCAATCATAGATTATACACCAAAAGCACGCTAGTTCAGATTTCAGGGCGAGTTGGGAGAGCAGCAGAGCGT
CCAACAGGAGAACTGTTATTCTTGCATGACGGTAGTACCAAAGAAATGAGGAAAGCTATTGCTGAAATTAAAGCGATGAA
TAAAAAAGGAGGATTTGCATGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(96-244)

Helicase conserved C-terminal domain (Helicase_C)

(287-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae TIGR4

59.251

98.614

0.584
  comFA/cflA Streptococcus pneumoniae Rx1

59.251

98.614

0.584
  comFA/cflA Streptococcus pneumoniae D39

59.251

98.614

0.584
  comFA/cflA Streptococcus pneumoniae R6

59.251

98.614

0.584
  comFA/cflA Streptococcus mitis NCTC 12261

59.016

98.614

0.582
  comFA/cflA Streptococcus mitis SK321

58.314

98.614

0.575
  comFA Lactococcus lactis subsp. cremoris KW2

49.755

94.226

0.469
  comFA Latilactobacillus sakei subsp. sakei 23K

37.819

99.538

0.376

Multiple sequence alignment