Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLCDX_RS16855 Genome accession   NZ_CP180263
Coordinates   3265135..3265290 (-) Length   51 a.a.
NCBI ID   WP_277722747.1    Uniprot ID   -
Organism   Bacillus safensis strain BS22LVI     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3264659..3283953 3265135..3265290 within 0


Gene organization within MGE regions


Location: 3264659..3283953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCDX_RS16850 (ACLCDX_16850) - 3264659..3265078 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  ACLCDX_RS16855 (ACLCDX_16855) comFC 3265135..3265290 (-) 156 WP_277722747.1 ComF family protein Machinery gene
  ACLCDX_RS16860 (ACLCDX_16860) - 3265302..3265790 (-) 489 WP_415316066.1 ComF family protein -
  ACLCDX_RS16865 (ACLCDX_16865) - 3265817..3266110 (-) 294 WP_254965333.1 late competence development ComFB family protein -
  ACLCDX_RS16870 (ACLCDX_16870) epsC 3266435..3267283 (-) 849 WP_254965332.1 serine O-acetyltransferase EpsC -
  ACLCDX_RS16875 (ACLCDX_16875) pyrH 3267384..3268124 (+) 741 WP_254965331.1 UMP kinase -
  ACLCDX_RS16880 (ACLCDX_16880) - 3268180..3269358 (-) 1179 WP_254965329.1 MFS transporter -
  ACLCDX_RS16885 (ACLCDX_16885) - 3269421..3270341 (-) 921 WP_254965327.1 phosphotransferase -
  ACLCDX_RS16890 (ACLCDX_16890) - 3270356..3271531 (-) 1176 WP_254965326.1 ATP-grasp domain-containing protein -
  ACLCDX_RS16895 (ACLCDX_16895) - 3271533..3272753 (-) 1221 WP_254965324.1 ATP-grasp domain-containing protein -
  ACLCDX_RS16900 (ACLCDX_16900) - 3272764..3274359 (-) 1596 WP_254965322.1 class I adenylate-forming enzyme family protein -
  ACLCDX_RS16905 (ACLCDX_16905) - 3274399..3274656 (-) 258 WP_254965320.1 acyl carrier protein -
  ACLCDX_RS16910 (ACLCDX_16910) - 3274653..3274955 (-) 303 WP_415316068.1 SDR family oxidoreductase -
  ACLCDX_RS16915 (ACLCDX_16915) - 3274970..3275374 (-) 405 WP_415316069.1 SDR family NAD(P)-dependent oxidoreductase -
  ACLCDX_RS16920 (ACLCDX_16920) - 3275375..3276343 (-) 969 WP_254965317.1 alpha/beta hydrolase -
  ACLCDX_RS16925 (ACLCDX_16925) - 3276348..3277865 (-) 1518 WP_254965315.1 NAD(P)-dependent oxidoreductase -
  ACLCDX_RS16930 (ACLCDX_16930) - 3277880..3278575 (-) 696 WP_254965312.1 hypothetical protein -
  ACLCDX_RS16935 (ACLCDX_16935) - 3278587..3279435 (-) 849 WP_254965310.1 NAD(P)-dependent oxidoreductase -
  ACLCDX_RS16940 (ACLCDX_16940) - 3279439..3280914 (-) 1476 WP_254965308.1 nucleoside monophosphate kinase -
  ACLCDX_RS16945 (ACLCDX_16945) - 3280911..3282023 (-) 1113 WP_254965306.1 nucleotidyltransferase family protein -
  ACLCDX_RS16950 (ACLCDX_16950) - 3282020..3282322 (-) 303 WP_254965304.1 Dabb family protein -
  ACLCDX_RS16955 (ACLCDX_16955) - 3283111..3283953 (-) 843 WP_254965302.1 DegV family protein -

Sequence

Protein


Download         Length: 51 a.a.        Molecular weight: 5634.49 Da        Isoelectric Point: 6.1124

>NTDB_id=1094993 ACLCDX_RS16855 WP_277722747.1 3265135..3265290(-) (comFC) [Bacillus safensis strain BS22LVI]
MFQIKQTDAIVQRDIILVDDIYTTGATIYDAARILKDAGAKSVSSFTLIRS

Nucleotide


Download         Length: 156 bp        

>NTDB_id=1094993 ACLCDX_RS16855 WP_277722747.1 3265135..3265290(-) (comFC) [Bacillus safensis strain BS22LVI]
TTGTTTCAAATAAAGCAAACAGATGCGATTGTTCAAAGGGATATTATATTAGTTGATGATATCTATACAACGGGAGCAAC
CATCTATGATGCGGCAAGAATTTTGAAAGACGCAGGTGCTAAAAGTGTTTCTTCTTTTACGTTGATACGTAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(12-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

69.231

76.471

0.529
  comFC Lactococcus lactis subsp. cremoris KW2

46.939

96.078

0.451
  comFC/cflB Streptococcus pneumoniae D39

46.667

88.235

0.412
  comFC/cflB Streptococcus pneumoniae R6

46.667

88.235

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

46.667

88.235

0.412
  comFC/cflB Streptococcus pneumoniae Rx1

46.667

88.235

0.412
  comFC/cflB Streptococcus mitis SK321

47.5

78.431

0.373
  comFC/cflB Streptococcus mitis NCTC 12261

42.222

88.235

0.373

Multiple sequence alignment