Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACMVO4_RS10455 Genome accession   NZ_CP180205
Coordinates   2301888..2302181 (-) Length   97 a.a.
NCBI ID   WP_069666835.1    Uniprot ID   -
Organism   Vibrio europaeus strain EX1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2296888..2307181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMVO4_RS10430 (ACMVO4_10430) lapB 2297172..2298341 (-) 1170 WP_414931332.1 lipopolysaccharide assembly protein LapB -
  ACMVO4_RS10435 (ACMVO4_10435) - 2298368..2298646 (-) 279 WP_004743675.1 LapA family protein -
  ACMVO4_RS10440 (ACMVO4_10440) ihfB 2298788..2299069 (-) 282 WP_069666832.1 integration host factor subunit beta -
  ACMVO4_RS10445 (ACMVO4_10445) rpsA 2299281..2300951 (-) 1671 WP_069666833.1 30S ribosomal protein S1 -
  ACMVO4_RS10450 (ACMVO4_10450) cmk 2301055..2301735 (-) 681 WP_069666834.1 (d)CMP kinase -
  ACMVO4_RS10455 (ACMVO4_10455) comEA 2301888..2302181 (-) 294 WP_069666835.1 ComEA family DNA-binding protein Machinery gene
  ACMVO4_RS10460 (ACMVO4_10460) ppiD 2302318..2304177 (-) 1860 WP_414931333.1 peptidylprolyl isomerase -
  ACMVO4_RS10465 (ACMVO4_10465) - 2304351..2304623 (-) 273 WP_069666837.1 HU family DNA-binding protein -
  ACMVO4_RS10470 (ACMVO4_10470) lon 2304817..2307168 (-) 2352 WP_414931334.1 endopeptidase La -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10313.01 Da        Isoelectric Point: 9.0631

>NTDB_id=1094513 ACMVO4_RS10455 WP_069666835.1 2301888..2302181(-) (comEA) [Vibrio europaeus strain EX1]
MLKQILLIAALICAAPFSFANDVKSDPKYDGIEITVNINTAGAQELADLLNGIGIKKAQAIVEHRKQHGKFASAESLTEV
KGIGAAIVAKNQSRIQL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1094513 ACMVO4_RS10455 WP_069666835.1 2301888..2302181(-) (comEA) [Vibrio europaeus strain EX1]
ATGCTGAAACAGATCCTTCTCATCGCGGCACTGATATGTGCTGCGCCTTTCTCTTTTGCCAACGATGTTAAATCTGATCC
CAAGTATGATGGGATTGAAATCACGGTGAACATAAACACCGCCGGTGCGCAGGAGTTGGCAGATTTACTCAATGGAATTG
GCATAAAGAAAGCTCAAGCGATCGTTGAGCATCGAAAGCAACATGGTAAGTTTGCCAGTGCGGAGTCTTTGACCGAAGTG
AAAGGAATTGGCGCTGCAATTGTTGCCAAAAATCAATCTCGGATCCAACTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

57.292

98.969

0.567
  comEA Vibrio campbellii strain DS40M4

55.319

96.907

0.536
  comEA Vibrio cholerae C6706

61.765

70.103

0.433
  comEA Vibrio cholerae strain A1552

61.765

70.103

0.433
  comEA/comE1 Glaesserella parasuis strain SC1401

61.667

61.856

0.381
  comEA Acinetobacter baylyi ADP1

53.846

67.01

0.361

Multiple sequence alignment