Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACMHYC_RS18160 Genome accession   NZ_CP180027
Coordinates   3833395..3834525 (+) Length   376 a.a.
NCBI ID   WP_032876250.1    Uniprot ID   -
Organism   Acinetobacter courvalinii isolate 2024CK-01798     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3828395..3839525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMHYC_RS18140 (ACMHYC_18140) - 3828930..3831050 (-) 2121 WP_414659487.1 TonB-dependent copper receptor -
  ACMHYC_RS18145 (ACMHYC_18145) - 3831124..3831561 (-) 438 WP_414659488.1 DUF2946 family protein -
  ACMHYC_RS18150 (ACMHYC_18150) def 3831581..3832111 (-) 531 WP_005228396.1 peptide deformylase -
  ACMHYC_RS18155 (ACMHYC_18155) tsaP 3832235..3833386 (+) 1152 WP_414659489.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACMHYC_RS18160 (ACMHYC_18160) dprA 3833395..3834525 (+) 1131 WP_032876250.1 DNA-processing protein DprA Machinery gene
  ACMHYC_RS18165 (ACMHYC_18165) - 3834563..3835132 (+) 570 WP_005281204.1 Sua5/YciO/YrdC/YwlC family protein -
  ACMHYC_RS18170 (ACMHYC_18170) - 3835526..3836446 (-) 921 WP_414659900.1 DMT family transporter -
  ACMHYC_RS18175 (ACMHYC_18175) - 3836551..3837204 (-) 654 WP_199950032.1 TetR/AcrR family transcriptional regulator -
  ACMHYC_RS18180 (ACMHYC_18180) - 3837341..3838561 (+) 1221 WP_199950031.1 MFS transporter -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42045.83 Da        Isoelectric Point: 6.8444

>NTDB_id=1094113 ACMHYC_RS18160 WP_032876250.1 3833395..3834525(+) (dprA) [Acinetobacter courvalinii isolate 2024CK-01798]
MLNQLSPHHYPTVLVWYLVQHSLSSFHKIQQYFGSCEQATQPQRFSEWEQLGLHANHLKRLKEFQTAQGQQQFEQLLQLI
CRHSDFILTPDDIGYPTQLLPYSDRPPILFGQGQAQALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAHG
IDQAAHQGGLAHQRTIAVTGTGLDSVYPAQHKQLAQQIRQSGAIVTEFLPTTMPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAATQGKMVFAIPGHIYSEHHQGCHQLIREGAILVDHPEQVIEDLALPTQWQAQQQPATESSSAPPTLPAH
LIELYQVLDWVGQDLDQLAQRYSAPIAELTAQLMELELLGLSMQQAGRYLRCRPMH

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1094113 ACMHYC_RS18160 WP_032876250.1 3833395..3834525(+) (dprA) [Acinetobacter courvalinii isolate 2024CK-01798]
ATGTTGAATCAATTATCGCCTCATCACTACCCTACCGTGCTGGTGTGGTACTTGGTTCAACATTCGCTTTCCAGCTTTCA
CAAGATTCAGCAATATTTTGGCAGCTGTGAACAGGCAACCCAACCGCAGCGTTTTTCGGAATGGGAGCAACTGGGCCTGC
ATGCCAACCATTTAAAACGTCTAAAAGAATTTCAGACCGCACAAGGCCAGCAACAGTTTGAACAGCTGCTGCAACTGATT
TGCCGTCATAGTGACTTTATTTTAACGCCCGACGATATTGGCTATCCGACGCAGCTACTGCCTTATAGCGACCGTCCACC
GATCCTGTTTGGACAGGGTCAGGCCCAAGCGCTATTACAACCCCAGATTGCCATGGTCGGCAGTCGTAAGCCGAGTCCTC
ATGGGCGTCAAGTGGCTTATGATTTTGCTTACTATTTAAGTGAAAAGGGTTTTTACATCAGTAGTGGTCTGGCCCATGGG
ATTGATCAGGCCGCGCATCAGGGTGGACTGGCGCATCAGCGTACTATCGCAGTGACGGGTACAGGACTCGACAGTGTCTA
CCCTGCCCAGCATAAACAGCTCGCGCAACAGATTCGCCAGTCAGGCGCGATTGTGACTGAATTTCTACCCACCACCATGC
CTTTACAACAACATTTCCCACGACGAAACCGGATTGTCAGTGGCTTGAGTCTGGGCGTATTGGTGGTCGAAGCCGCACTC
AAAAGTGGTTCATTGATTACCGCCAATGAGGCAGCCACTCAGGGCAAAATGGTATTCGCCATTCCTGGACATATTTATAG
TGAGCATCATCAGGGCTGTCATCAACTGATTCGCGAAGGCGCGATTCTGGTCGATCATCCTGAACAGGTGATTGAAGATC
TGGCTTTACCGACGCAATGGCAAGCGCAGCAGCAGCCAGCAACAGAAAGCAGCTCGGCACCGCCAACCCTACCCGCACAT
TTAATTGAGCTGTATCAGGTTTTAGACTGGGTCGGACAGGATCTGGATCAGCTGGCGCAACGCTATTCTGCACCTATTGC
TGAATTAACCGCCCAATTAATGGAACTGGAATTACTCGGTTTAAGCATGCAACAGGCAGGACGCTATTTACGTTGCCGTC
CAATGCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

76.533

99.734

0.763

  dprA Acinetobacter baumannii strain A118

76

99.734

0.758

  dprA Acinetobacter baylyi ADP1

71.316

100

0.721

  dprA Vibrio cholerae strain A1552

43.333

87.766

0.38

  dprA Neisseria meningitidis strain C311

36.675

100

0.37

  dprA Neisseria meningitidis MC58

36.675

100

0.37


Multiple sequence alignment