Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACMGGG_RS24745 Genome accession   NZ_CP179908
Coordinates   5458958..5460445 (-) Length   495 a.a.
NCBI ID   WP_414154585.1    Uniprot ID   -
Organism   Pseudomonas sp. BNK-44-b     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5453958..5465445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMGGG_RS24720 (ACMGGG_24720) - 5454838..5455116 (+) 279 WP_414155842.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACMGGG_RS24725 (ACMGGG_24725) - 5455128..5455412 (+) 285 WP_414154583.1 HigA family addiction module antitoxin -
  ACMGGG_RS24730 (ACMGGG_24730) - 5455503..5457290 (-) 1788 WP_112897087.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  ACMGGG_RS24735 (ACMGGG_24735) - 5457510..5458526 (-) 1017 WP_153772508.1 alpha/beta hydrolase -
  ACMGGG_RS24740 (ACMGGG_24740) - 5458560..5458814 (-) 255 WP_414154584.1 DUF2790 domain-containing protein -
  ACMGGG_RS24745 (ACMGGG_24745) comM 5458958..5460445 (-) 1488 WP_414154585.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACMGGG_RS24750 (ACMGGG_24750) leuA 5460811..5462508 (+) 1698 WP_414154586.1 2-isopropylmalate synthase -
  ACMGGG_RS24755 (ACMGGG_24755) - 5462686..5463945 (-) 1260 WP_186710900.1 efflux RND transporter periplasmic adaptor subunit -
  ACMGGG_RS24760 (ACMGGG_24760) - 5463938..5465380 (-) 1443 WP_414155843.1 TolC family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52915.75 Da        Isoelectric Point: 8.2586

>NTDB_id=1093787 ACMGGG_RS24745 WP_414154585.1 5458958..5460445(-) (comM) [Pseudomonas sp. BNK-44-b]
MSLALVHSRAQVGVLAPAVSVETHLANGLPNLTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLVDFECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLASGLVVYAVGHL
QELVAHLNGQAPLPAYAANGLMLRARPYPDLSEVQGQIAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPIDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVISRARDRVRFPARFQLVAAMNPCPCGYLGDPAARCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTTLSHQPSG
ETSASVAAQVAQTRERQQRRQGCANAFLDMPGLRKHCDLKAADQSWLEGACERLNLSLRAAHRLLKVARTLADLEQAERI
ARPHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1093787 ACMGGG_RS24745 WP_414154585.1 5458958..5460445(-) (comM) [Pseudomonas sp. BNK-44-b]
ATGTCTCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCTGGCGCCGGCAGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCAACCTCACCCTGGTCGGCCTGCCCGAGGCCACGGTCAAGGAAAGCAAGGACCGGGTACGCAGTGCCATCG
TCAATTCCGGCCTCGAATACCCGGCCCGACGCATCACCCAGAGTCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TACGACCTTGCCATCGCCTTGGGCATCCTCGCCGCCAACGGCCAGGTGCCGGTGGCGACCTTGGTCGATTTCGAATGCCT
GGGCGAGTTGGCGCTATCCGGGGCATTGCGCCCGGTGCAGGGCGTGCTGCCAGCGGCGCTGGCGGCGCGGGAGGCCGGGC
GGGCACTGGTGGTGCCGCGGGAGAATGCCGAGGAGGCGAGTTTGGCCAGTGGGCTGGTGGTGTATGCGGTCGGGCACCTG
CAGGAGCTGGTAGCACATCTCAATGGCCAGGCACCGCTGCCAGCCTATGCCGCCAATGGCTTGATGCTACGCGCGCGCCC
CTATCCGGACCTGAGCGAAGTACAGGGGCAGATCGCGGCCAAGCGCGCCCTTCTGGTCGCGGCGGCGGGGGCGCACAATC
TGCTGTTTACCGGGCCACCCGGCACTGGCAAGACCTTGCTTGCCAGCCGCCTGCCAGGCTTGCTGCCGCCGCTGGACGAG
CACGAGGCGCTGGAGGTTGCGGCCATCCAGTCGGTCAGCGGCAAGGCACCGATCGACTGCTGGCCACAGCGGCCGTTTCG
CCACCCTCATCACAGCGCGTCGGGCCCGGCACTGGTCGGTGGCGGCAGTCGGCCACAGCCTGGAGAAATCACCCTGGCCC
ATCATGGGGTGCTGTTTCTTGACGAACTGCCCGAGTTCGAACGGCGTGTGCTGGAGGTGCTGCGCGAGCCGCTGGAGTCT
GGCGAGATCGTGATTTCACGGGCCAGGGACCGGGTGCGCTTTCCTGCGCGCTTTCAACTGGTAGCGGCGATGAACCCCTG
CCCCTGCGGCTATCTGGGCGACCCGGCAGCCCGCTGCCGGTGCAGCCCTGAGCAGATCCAGCGCTACCGCAACAAGCTCT
CGGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACGGTCGCACGCGAAAGCACCACCCTCAGCCACCAGCCCAGTGGC
GAGACCAGCGCCAGCGTCGCCGCCCAGGTCGCCCAGACCCGCGAGCGGCAACAGCGTCGTCAGGGTTGTGCCAACGCGTT
TCTCGATATGCCAGGCCTGCGCAAACATTGTGATCTGAAAGCCGCCGACCAGTCATGGCTGGAGGGCGCGTGCGAGCGAC
TCAACCTTTCGTTGCGCGCCGCTCACCGTCTGCTCAAGGTCGCCCGCACCCTGGCCGACCTTGAACAAGCCGAGCGCATC
GCCCGCCCCCATCTGGCTGAGGCCCTGCAATACCGCCCCGGTAGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.734

100

0.56
  comM Haemophilus influenzae Rd KW20

54.91

100

0.554
  comM Vibrio cholerae strain A1552

55.242

100

0.554
  comM Glaesserella parasuis strain SC1401

53.386

100

0.541
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.809

100

0.485

Multiple sequence alignment