Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ABFT42_RS12435 Genome accession   NZ_CP178596
Coordinates   2394249..2394545 (-) Length   98 a.a.
NCBI ID   WP_010334925.1    Uniprot ID   A0AAP3G120
Organism   Bacillus mojavensis strain C3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2389249..2399545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12390 (ABFT42_12390) tasA 2389652..2390437 (-) 786 WP_010334917.1 biofilm matrix protein TasA -
  ABFT42_RS12395 (ABFT42_12395) sipW 2390502..2391086 (-) 585 WP_339190980.1 signal peptidase I SipW -
  ABFT42_RS12400 (ABFT42_12400) tapA 2391058..2391819 (-) 762 WP_413286393.1 amyloid fiber anchoring/assembly protein TapA -
  ABFT42_RS12405 (ABFT42_12405) - 2392096..2392419 (+) 324 WP_168748230.1 YqzG/YhdC family protein -
  ABFT42_RS12410 (ABFT42_12410) - 2392462..2392641 (-) 180 WP_003236949.1 YqzE family protein -
  ABFT42_RS12415 (ABFT42_12415) comGG 2392713..2393087 (-) 375 WP_339177153.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABFT42_RS12420 (ABFT42_12420) comGF 2393088..2393495 (-) 408 WP_413286394.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABFT42_RS12425 (ABFT42_12425) comGE 2393497..2393844 (-) 348 WP_268451134.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABFT42_RS12430 (ABFT42_12430) comGD 2393828..2394259 (-) 432 WP_010334924.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABFT42_RS12435 (ABFT42_12435) comGC 2394249..2394545 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  ABFT42_RS12440 (ABFT42_12440) comGB 2394559..2395596 (-) 1038 WP_413286395.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABFT42_RS12445 (ABFT42_12445) comGA 2395583..2396653 (-) 1071 WP_168748237.1 competence protein ComGA Machinery gene
  ABFT42_RS12450 (ABFT42_12450) - 2397006..2397176 (-) 171 WP_339177165.1 hypothetical protein -
  ABFT42_RS12455 (ABFT42_12455) - 2397400..2398350 (-) 951 WP_413286396.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10775.64 Da        Isoelectric Point: 6.7076

>NTDB_id=1090320 ABFT42_RS12435 WP_010334925.1 2394249..2394545(-) (comGC) [Bacillus mojavensis strain C3]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMIKAQVTAYELDHDGKTPSLGDLQAEGYVKKDAV
CPNGKQIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=1090320 ABFT42_RS12435 WP_010334925.1 2394249..2394545(-) (comGC) [Bacillus mojavensis strain C3]
ATGAATGAGAAAGGGTTTACACTTGTGGAGATGCTAATCGTGCTCTTTATTATTTCTATTTTGCTATTGATCACCATACC
GAATGTAACAAAACATAATCAAACCATTCAGAAAAAAGGCTGTGAAGGCCTCCAAAACATGATAAAGGCGCAGGTAACAG
CATATGAACTCGATCATGACGGGAAGACACCAAGCCTCGGCGATTTACAGGCAGAAGGCTATGTGAAAAAGGATGCGGTT
TGTCCAAATGGAAAGCAAATTATCATTACCGGCGGGGAGGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

91.837

100

0.918
  comGC Staphylococcus aureus MW2

42.391

93.878

0.398
  comGC Staphylococcus aureus N315

42.391

93.878

0.398
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378
  comGC Latilactobacillus sakei subsp. sakei 23K

37.113

98.98

0.367

Multiple sequence alignment