Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ABFT42_RS12445 Genome accession   NZ_CP178596
Coordinates   2395583..2396653 (-) Length   356 a.a.
NCBI ID   WP_168748237.1    Uniprot ID   A0AAP3CRF1
Organism   Bacillus mojavensis strain C3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2390583..2401653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS12400 (ABFT42_12400) tapA 2391058..2391819 (-) 762 WP_413286393.1 amyloid fiber anchoring/assembly protein TapA -
  ABFT42_RS12405 (ABFT42_12405) - 2392096..2392419 (+) 324 WP_168748230.1 YqzG/YhdC family protein -
  ABFT42_RS12410 (ABFT42_12410) - 2392462..2392641 (-) 180 WP_003236949.1 YqzE family protein -
  ABFT42_RS12415 (ABFT42_12415) comGG 2392713..2393087 (-) 375 WP_339177153.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABFT42_RS12420 (ABFT42_12420) comGF 2393088..2393495 (-) 408 WP_413286394.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABFT42_RS12425 (ABFT42_12425) comGE 2393497..2393844 (-) 348 WP_268451134.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABFT42_RS12430 (ABFT42_12430) comGD 2393828..2394259 (-) 432 WP_010334924.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABFT42_RS12435 (ABFT42_12435) comGC 2394249..2394545 (-) 297 WP_010334925.1 competence type IV pilus major pilin ComGC Machinery gene
  ABFT42_RS12440 (ABFT42_12440) comGB 2394559..2395596 (-) 1038 WP_413286395.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABFT42_RS12445 (ABFT42_12445) comGA 2395583..2396653 (-) 1071 WP_168748237.1 competence protein ComGA Machinery gene
  ABFT42_RS12450 (ABFT42_12450) - 2397006..2397176 (-) 171 WP_339177165.1 hypothetical protein -
  ABFT42_RS12455 (ABFT42_12455) - 2397400..2398350 (-) 951 WP_413286396.1 magnesium transporter CorA family protein -
  ABFT42_RS12460 (ABFT42_12460) - 2398494..2399823 (+) 1330 Protein_2404 hemolysin family protein -
  ABFT42_RS12465 (ABFT42_12465) - 2399903..2400742 (-) 840 WP_340884636.1 STAS domain-containing protein -
  ABFT42_RS12475 (ABFT42_12475) mgsR 2400975..2401355 (-) 381 WP_026014741.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40445.55 Da        Isoelectric Point: 8.6434

>NTDB_id=1090322 ABFT42_RS12445 WP_168748237.1 2395583..2396653(-) (comGA) [Bacillus mojavensis strain C3]
MDSIENISRTLIEEAYKTKASDIHIVPRERDAIIHFRVDNALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLKEGDVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPQTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLIQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAQIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPYCENGCSSVYCRLSRNIRRASVYELLYGKNLQQCIQEAKGD
NANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1090322 ABFT42_RS12445 WP_168748237.1 2395583..2396653(-) (comGA) [Bacillus mojavensis strain C3]
TTGGATTCGATAGAAAACATAAGTAGAACCTTAATAGAAGAGGCATATAAGACGAAGGCCTCTGACATTCACATTGTGCC
AAGGGAACGGGACGCGATCATCCATTTTCGGGTTGACAATGCATTGCTGAAAAAGCGAAACATGAAAAAAGAAGAGTGTG
TAAGGCTCATTTCTCATTTTAAGTTTCTCTCAGCTATGGACATTGGGGAGAGAAGAAAGCCGCAAAGTGGATCGCTTACT
CTAAAATTAAAAGAGGGTGACGTTCACTTAAGGATGTCAACGCTCCCGACAATTAACGAAGAAAGCCTCGTCATCAGAGT
GATGCCTCAGTATAATATCCCTTCGATTGACAAACTGTCTTTATTCCCACAGACAGGAGCCACCTTGCTTTCATTTTTAA
AACACTCCCACGGCATGCTGATTTTTACCGGACCAACAGGCTCTGGGAAAACAACAACGTTATATTCTCTGATCCAATAT
GCAAAAAAACATTTTAATCGAAACATTGTCACACTTGAAGATCCAGTGGAAACGAGGGATGAAGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCCGGGGTCACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCCGATATGATCATTTTAG
GTGAGATTAGAGATGCTGAAACAGCCCAAATCGCGGTGCGGGCAGCGATGACTGGTCATTTAGTGCTGACGAGCCTTCAT
ACGAGAGATGCCAAGGGCGCGATTTACAGGCTGCTTGAATTTGGCATTAATATGAATGAAATCGAGCAAACGGTTATTGC
GATAGCGGCTCAGCGTTTAGTTGATTTGGCTTGCCCGTATTGTGAAAACGGATGTTCTTCAGTGTATTGCCGACTGTCAC
GAAACATAAGGAGAGCAAGCGTATACGAGCTGCTATACGGGAAAAACCTTCAGCAGTGTATTCAGGAAGCGAAAGGGGAC
AATGCAAATTACCAATATCAAACGTTGCGTCAAATTATAAGAAAAGGGATTGCGCTCGGCTATTTAACGACAAATAACTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

94.663

100

0.947
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.283

97.191

0.362

Multiple sequence alignment