Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACLF6L_RS03210 Genome accession   NZ_CP178333
Coordinates   721056..722420 (-) Length   454 a.a.
NCBI ID   WP_238617414.1    Uniprot ID   -
Organism   Ectothiorhodospira shaposhnikovii strain PHS-Q     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 716056..727420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLF6L_RS03190 (ACLF6L_03190) coaE 716504..717103 (-) 600 WP_412852356.1 dephospho-CoA kinase -
  ACLF6L_RS03195 (ACLF6L_03195) pilD 717107..717922 (-) 816 WP_238617487.1 prepilin peptidase Machinery gene
  ACLF6L_RS03200 (ACLF6L_03200) pilC 717982..719190 (-) 1209 WP_238617412.1 type II secretion system F family protein Machinery gene
  ACLF6L_RS03205 (ACLF6L_03205) pilB 719194..720906 (-) 1713 WP_238617413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACLF6L_RS03210 (ACLF6L_03210) pilR 721056..722420 (-) 1365 WP_238617414.1 sigma-54-dependent transcriptional regulator Regulator
  ACLF6L_RS03215 (ACLF6L_03215) - 722417..724087 (-) 1671 WP_412852357.1 sensor histidine kinase -
  ACLF6L_RS03220 (ACLF6L_03220) - 724135..724386 (-) 252 WP_238617416.1 PP0621 family protein -
  ACLF6L_RS03225 (ACLF6L_03225) sucC 724524..725693 (+) 1170 WP_238617417.1 ADP-forming succinate--CoA ligase subunit beta -
  ACLF6L_RS03230 (ACLF6L_03230) sucD 725757..726626 (+) 870 WP_238617418.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 50148.65 Da        Isoelectric Point: 6.5107

>NTDB_id=1088886 ACLF6L_RS03210 WP_238617414.1 721056..722420(-) (pilR) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
MSIQNVLIIDDEPDIRELLEITLGRMRLHTRSAGTVREAKRLLGNEPFDLCLTDMRLPDGDGIELVEHIQAYYPELPVAV
ITAYGSMDSAVQALKSGAFDFVSKPVDLNILRDLVGSALKLGKPGDGEGNDAASTRHQPPREEHLLGDAPAMRQLKATIL
KLARSQAPVYILGESGSGKERVAREIHRQGPRVDRPFVPVNCGAIPAELMESEFFGHLKGSFTGAVADKQGLFQAAQGGT
LFLDEVAELPLHMQVKLLRAIQERAIKPIGAAHEIALDVRILSASHKDLSREVQAGRFRQDLFYRLNVIELRVPPLRERR
EDLPHLASHILSRLAQRWQEPPRRLSPDAMQGLMTYDYPGNVRELENILERAATLCDSDIIRVEDLQLPSAVTPPAPLAG
EPLKPLEQQLEQQERQVLLTALEQAGGHGATAARLLGLTARQLSYRLKKLGLPP

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1088886 ACLF6L_RS03210 WP_238617414.1 721056..722420(-) (pilR) [Ectothiorhodospira shaposhnikovii strain PHS-Q]
ATGAGCATCCAGAACGTACTGATCATCGACGATGAGCCGGATATCCGGGAACTCCTGGAGATCACCCTCGGCCGCATGCG
GCTCCATACCCGCTCCGCAGGGACCGTCAGGGAGGCAAAACGGCTGCTCGGCAACGAACCCTTTGATCTGTGCCTGACGG
ACATGCGCCTGCCGGATGGTGACGGCATCGAGCTGGTGGAGCACATCCAGGCCTACTATCCGGAGCTGCCGGTGGCGGTC
ATCACGGCCTACGGCAGCATGGATTCCGCCGTTCAGGCCCTCAAGTCGGGGGCCTTTGACTTTGTCTCCAAGCCCGTGGA
CCTGAACATCCTCAGGGATCTGGTGGGCAGCGCCCTGAAACTGGGCAAACCCGGCGACGGTGAAGGCAATGATGCGGCCT
CGACCAGACACCAGCCACCCAGGGAGGAGCATCTCCTGGGTGATGCACCGGCCATGCGTCAGCTCAAGGCCACCATCCTC
AAGCTGGCCAGAAGCCAGGCACCGGTCTACATCCTGGGCGAATCCGGTAGCGGCAAGGAAAGGGTGGCCCGGGAAATTCA
CCGCCAGGGTCCCCGGGTGGATCGGCCTTTCGTGCCGGTGAACTGCGGCGCCATCCCCGCCGAACTCATGGAAAGCGAGT
TCTTCGGTCACCTCAAGGGCAGCTTCACCGGTGCAGTGGCCGACAAGCAGGGCCTGTTCCAGGCGGCTCAGGGGGGGACC
CTCTTTCTCGATGAAGTGGCGGAACTGCCGCTGCACATGCAGGTGAAGCTGTTGCGCGCCATCCAGGAACGGGCCATCAA
GCCCATCGGGGCCGCCCACGAGATCGCCCTGGACGTGCGCATTCTCTCTGCCTCCCACAAGGACCTGAGCCGGGAGGTGC
AGGCGGGGCGGTTCCGCCAGGATCTGTTCTATCGCCTGAATGTGATCGAATTGCGCGTCCCTCCCCTGCGGGAGCGCCGG
GAAGACCTCCCGCATCTGGCGTCACACATCCTCTCCAGGCTGGCCCAGCGCTGGCAGGAACCGCCCAGGCGACTCAGCCC
GGATGCCATGCAGGGACTGATGACCTACGACTATCCGGGCAACGTCAGGGAGCTGGAAAACATCCTGGAGCGGGCGGCCA
CCCTGTGCGACAGCGACATCATTCGGGTGGAGGACCTGCAACTGCCCAGTGCCGTGACGCCGCCTGCCCCGCTTGCCGGG
GAACCCCTCAAACCCCTGGAGCAACAGCTGGAACAGCAGGAAAGACAGGTCCTGCTGACCGCCCTGGAACAGGCGGGAGG
TCACGGCGCGACCGCCGCCCGGCTGCTGGGGCTGACGGCCAGGCAACTGAGTTACCGGCTCAAGAAGCTCGGACTGCCCC
CCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-113)

Bacterial regulatory protein, Fis family (HTH_8)

(410-450)

Sigma-54 interaction domain (Sigma54_activat)

(146-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.035

100

0.643
  pilR Acinetobacter baumannii strain A118

47.312

100

0.485

Multiple sequence alignment