Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACFCT9_RS03290 Genome accession   NZ_CP178241
Coordinates   697909..698238 (-) Length   109 a.a.
NCBI ID   WP_412520830.1    Uniprot ID   -
Organism   Staphylococcus simulans strain PFJB-50N     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 692909..703238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCT9_RS03265 gcvPA 693423..694769 (-) 1347 WP_412520820.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACFCT9_RS03270 gcvT 694791..695885 (-) 1095 WP_412520822.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFCT9_RS03275 - 696082..696603 (-) 522 WP_412520824.1 shikimate kinase -
  ACFCT9_RS03280 comGF 696768..697262 (-) 495 WP_412520826.1 competence type IV pilus minor pilin ComGF -
  ACFCT9_RS03285 comGD 697481..697891 (-) 411 WP_412520828.1 competence type IV pilus minor pilin ComGD -
  ACFCT9_RS03290 comGC 697909..698238 (-) 330 WP_412520830.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFCT9_RS03295 comGB 698257..699330 (-) 1074 WP_412520832.1 competence type IV pilus assembly protein ComGB -
  ACFCT9_RS03300 comGA 699302..700276 (-) 975 WP_412520834.1 competence type IV pilus ATPase ComGA Machinery gene
  ACFCT9_RS03305 - 700332..700955 (-) 624 WP_412520836.1 MBL fold metallo-hydrolase -
  ACFCT9_RS03310 - 700955..701284 (-) 330 WP_412520838.1 MTH1187 family thiamine-binding protein -
  ACFCT9_RS03315 - 701284..702270 (-) 987 WP_412520840.1 ROK family glucokinase -
  ACFCT9_RS03320 - 702270..702470 (-) 201 WP_107606094.1 YqgQ family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12082.25 Da        Isoelectric Point: 10.1412

>NTDB_id=1088609 ACFCT9_RS03290 WP_412520830.1 697909..698238(-) (comGC) [Staphylococcus simulans strain PFJB-50N]
MTKKFKNLKQKYLKAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTISISNGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1088609 ACFCT9_RS03290 WP_412520830.1 697909..698238(-) (comGC) [Staphylococcus simulans strain PFJB-50N]
ATGACAAAAAAATTCAAAAATTTAAAACAAAAATATCTAAAAGCATTTACTTTACTCGAAATGCTTTTAGTTCTCTTAGT
GATTAGCGTGTTATTAATACTTATTATTCCGAATATCGCTAAACAATCTAAACATGTTCAAGATACCGGGTGTGAAGCCC
AACAAAAAATGGTAAATAGTCAAATCGAGGCATTTACATTAAATAAGAACAGAGCACCGTCTTCTATTGATGAATTAGTG
AGTGAAGGATTTCTTAAAGAAGGTCAAAAAACATGTAAATCAGGCAAAACAATTTCAATCAGCAATGGCGAAGCAACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

69.231

95.413

0.661
  comGC Staphylococcus aureus N315

69.231

95.413

0.661
  comGC/cglC Streptococcus pneumoniae Rx1

43.81

96.33

0.422
  comGC/cglC Streptococcus pneumoniae R6

43.81

96.33

0.422
  comGC/cglC Streptococcus pneumoniae D39

43.81

96.33

0.422
  comGC/cglC Streptococcus pneumoniae TIGR4

43.81

96.33

0.422
  comGC/cglC Streptococcus mitis SK321

44.444

90.826

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

43.75

88.073

0.385
  comGC/cglC Streptococcus mitis NCTC 12261

48.78

75.229

0.367

Multiple sequence alignment