Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACKTWR_RS37820 | Genome accession | NZ_AP031304 |
| Coordinates | 7441271..7441765 (-) | Length | 164 a.a. |
| NCBI ID | WP_213429270.1 | Uniprot ID | - |
| Organism | Paenibacillus melissococcoides strain J22TS4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 7388653..7451351 | 7441271..7441765 | within | 0 |
Gene organization within MGE regions
Location: 7388653..7451351
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKTWR_RS37500 (PMJ22TS4_75990) | - | 7388653..7389090 (-) | 438 | WP_213431440.1 | helix-turn-helix domain-containing protein | - |
| ACKTWR_RS37505 (PMJ22TS4_76000) | - | 7389317..7389634 (+) | 318 | WP_261945210.1 | hypothetical protein | - |
| ACKTWR_RS37510 (PMJ22TS4_76010) | - | 7389631..7389843 (+) | 213 | WP_213431526.1 | helix-turn-helix domain-containing protein | - |
| ACKTWR_RS37515 (PMJ22TS4_76020) | - | 7390020..7392089 (+) | 2070 | WP_261945356.1 | Mu transposase C-terminal domain-containing protein | - |
| ACKTWR_RS37520 (PMJ22TS4_76030) | - | 7392105..7393085 (+) | 981 | WP_261945208.1 | AAA family ATPase | - |
| ACKTWR_RS37525 (PMJ22TS4_76040) | - | 7393097..7393450 (+) | 354 | WP_261945355.1 | hypothetical protein | - |
| ACKTWR_RS37530 (PMJ22TS4_76060) | - | 7393575..7393865 (+) | 291 | WP_390905354.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| ACKTWR_RS37535 (PMJ22TS4_76070) | - | 7393862..7394491 (+) | 630 | WP_261945354.1 | ABC transporter permease | - |
| ACKTWR_RS37540 (PMJ22TS4_76080) | - | 7394503..7394907 (+) | 405 | WP_213431500.1 | phage protein GemA/Gp16 family protein | - |
| ACKTWR_RS37545 (PMJ22TS4_76100) | - | 7395144..7395992 (+) | 849 | WP_213431502.1 | ATP-binding protein | - |
| ACKTWR_RS37550 (PMJ22TS4_76110) | - | 7396012..7396200 (+) | 189 | WP_213431369.1 | hypothetical protein | - |
| ACKTWR_RS37555 (PMJ22TS4_76120) | - | 7396224..7396658 (+) | 435 | WP_261945204.1 | hypothetical protein | - |
| ACKTWR_RS37560 | - | 7396658..7396888 (+) | 231 | WP_407873262.1 | hypothetical protein | - |
| ACKTWR_RS37565 | - | 7396914..7397651 (+) | 738 | WP_261945203.1 | N-acetylmuramoyl-L-alanine amidase family protein | - |
| ACKTWR_RS37570 (PMJ22TS4_76150) | - | 7397694..7398020 (+) | 327 | WP_261945202.1 | Mor transcription activator family protein | - |
| ACKTWR_RS37575 (PMJ22TS4_76160) | - | 7398133..7398561 (+) | 429 | WP_306433995.1 | guanylate kinase | - |
| ACKTWR_RS37580 (PMJ22TS4_76170) | - | 7398561..7398824 (+) | 264 | WP_213431481.1 | hypothetical protein | - |
| ACKTWR_RS37585 (PMJ22TS4_76180) | - | 7398825..7399142 (+) | 318 | WP_213431480.1 | hypothetical protein | - |
| ACKTWR_RS37590 (PMJ22TS4_76190) | - | 7399142..7399702 (+) | 561 | WP_261945201.1 | DUF3486 family protein | - |
| ACKTWR_RS37595 (PMJ22TS4_76200) | terL | 7399695..7401458 (+) | 1764 | WP_407873260.1 | phage terminase large subunit | - |
| ACKTWR_RS37600 (PMJ22TS4_76210) | - | 7401470..7403035 (+) | 1566 | WP_213431335.1 | DUF935 domain-containing protein | - |
| ACKTWR_RS37605 (PMJ22TS4_76220) | - | 7403019..7403756 (+) | 738 | WP_261948979.1 | phage minor head protein | - |
| ACKTWR_RS37610 (PMJ22TS4_76230) | - | 7403876..7404907 (+) | 1032 | WP_261948978.1 | phage protease | - |
| ACKTWR_RS37615 (PMJ22TS4_76240) | - | 7404937..7405338 (+) | 402 | WP_213430840.1 | hypothetical protein | - |
| ACKTWR_RS37620 (PMJ22TS4_76250) | - | 7405368..7406297 (+) | 930 | WP_213430841.1 | Mu-like prophage major head subunit gpT family protein | - |
| ACKTWR_RS37625 (PMJ22TS4_76260) | - | 7406319..7406765 (+) | 447 | WP_213430842.1 | gp436 family protein | - |
| ACKTWR_RS37630 (PMJ22TS4_76270) | - | 7406769..7407269 (+) | 501 | WP_213430843.1 | phage virion morphogenesis protein | - |
| ACKTWR_RS37635 (PMJ22TS4_76280) | - | 7407272..7407781 (+) | 510 | WP_213430844.1 | SON protein | - |
| ACKTWR_RS37640 (PMJ22TS4_76290) | - | 7407765..7407983 (+) | 219 | WP_213430845.1 | hypothetical protein | - |
| ACKTWR_RS37645 (PMJ22TS4_76300) | - | 7407976..7409391 (+) | 1416 | WP_213430846.1 | DUF2586 domain-containing protein | - |
| ACKTWR_RS37650 (PMJ22TS4_76310) | - | 7409395..7409829 (+) | 435 | WP_213430847.1 | hypothetical protein | - |
| ACKTWR_RS37655 (PMJ22TS4_76320) | - | 7409876..7410232 (+) | 357 | WP_213430848.1 | hypothetical protein | - |
| ACKTWR_RS37660 (PMJ22TS4_76330) | - | 7410277..7410441 (+) | 165 | WP_213430856.1 | hypothetical protein | - |
| ACKTWR_RS37665 (PMJ22TS4_76340) | - | 7410454..7410693 (-) | 240 | WP_213430849.1 | hypothetical protein | - |
| ACKTWR_RS37670 (PMJ22TS4_76350) | - | 7410839..7413148 (+) | 2310 | WP_407873208.1 | phage tail tape measure protein | - |
| ACKTWR_RS37675 (PMJ22TS4_76360) | - | 7413145..7413759 (+) | 615 | WP_213430851.1 | transcriptional regulator | - |
| ACKTWR_RS37680 (PMJ22TS4_76370) | - | 7413771..7414526 (+) | 756 | WP_261945408.1 | serine/arginine repetitive matrix protein 2 | - |
| ACKTWR_RS37685 (PMJ22TS4_76380) | - | 7414540..7414830 (+) | 291 | WP_213430852.1 | hypothetical protein | - |
| ACKTWR_RS37690 (PMJ22TS4_76390) | - | 7414830..7415243 (+) | 414 | WP_213430853.1 | DUF2634 domain-containing protein | - |
| ACKTWR_RS37695 (PMJ22TS4_76400) | - | 7415236..7416363 (+) | 1128 | WP_261944656.1 | baseplate J/gp47 family protein | - |
| ACKTWR_RS37700 (PMJ22TS4_76410) | - | 7416368..7417054 (+) | 687 | WP_213431380.1 | hypothetical protein | - |
| ACKTWR_RS37705 (PMJ22TS4_76420) | - | 7417051..7417371 (+) | 321 | WP_213431381.1 | hypothetical protein | - |
| ACKTWR_RS37710 (PMJ22TS4_76430) | - | 7417361..7418653 (+) | 1293 | WP_213431382.1 | phage tail protein | - |
| ACKTWR_RS37715 (PMJ22TS4_76440) | - | 7418665..7419009 (+) | 345 | WP_213431383.1 | hypothetical protein | - |
| ACKTWR_RS37720 (PMJ22TS4_76460) | - | 7419218..7419934 (+) | 717 | Protein_7427 | YhgE/Pip family protein | - |
| ACKTWR_RS37725 (PMJ22TS4_76470) | - | 7420045..7421353 (+) | 1309 | Protein_7428 | MFS transporter | - |
| ACKTWR_RS37730 (PMJ22TS4_76490) | - | 7422070..7422240 (-) | 171 | WP_006678705.1 | CxxH/CxxC protein | - |
| ACKTWR_RS37735 (PMJ22TS4_76500) | - | 7422368..7423612 (-) | 1245 | WP_213429283.1 | S1C family serine protease | - |
| ACKTWR_RS37740 (PMJ22TS4_76510) | - | 7423879..7424085 (+) | 207 | WP_006678707.1 | hypothetical protein | - |
| ACKTWR_RS37745 (PMJ22TS4_76520) | - | 7424057..7424878 (-) | 822 | WP_213429282.1 | MBL fold metallo-hydrolase | - |
| ACKTWR_RS37750 (PMJ22TS4_76530) | yycI | 7424875..7425621 (-) | 747 | WP_213429281.1 | two-component system regulatory protein YycI | - |
| ACKTWR_RS37755 (PMJ22TS4_76540) | - | 7425676..7426983 (-) | 1308 | WP_213429280.1 | YycH family regulatory protein | - |
| ACKTWR_RS37760 (PMJ22TS4_76550) | walK | 7426980..7428833 (-) | 1854 | WP_213429279.1 | cell wall metabolism sensor histidine kinase WalK | - |
| ACKTWR_RS37765 (PMJ22TS4_76560) | yycF | 7428834..7429568 (-) | 735 | WP_213429278.1 | response regulator YycF | - |
| ACKTWR_RS37770 (PMJ22TS4_76570) | - | 7429822..7431354 (-) | 1533 | WP_213429277.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ACKTWR_RS37775 (PMJ22TS4_76580) | - | 7431733..7432398 (-) | 666 | WP_213429276.1 | spore coat protein | - |
| ACKTWR_RS37780 (PMJ22TS4_76590) | - | 7432555..7433838 (-) | 1284 | WP_213429275.1 | adenylosuccinate synthase | - |
| ACKTWR_RS37785 (PMJ22TS4_76600) | dnaB | 7434014..7435369 (-) | 1356 | WP_197256933.1 | replicative DNA helicase | - |
| ACKTWR_RS37790 (PMJ22TS4_76610) | rplI | 7435371..7435814 (-) | 444 | WP_197256935.1 | 50S ribosomal protein L9 | - |
| ACKTWR_RS37795 (PMJ22TS4_76620) | - | 7435811..7437769 (-) | 1959 | WP_213429274.1 | DHH family phosphoesterase | - |
| ACKTWR_RS37800 (PMJ22TS4_76630) | - | 7437781..7438707 (-) | 927 | WP_213429273.1 | DUF2232 domain-containing protein | - |
| ACKTWR_RS37805 (PMJ22TS4_76640) | - | 7438835..7439257 (-) | 423 | WP_213429272.1 | CBS domain-containing protein | - |
| ACKTWR_RS37810 (PMJ22TS4_76650) | - | 7439376..7440353 (-) | 978 | WP_213429271.1 | LCP family protein | - |
| ACKTWR_RS37815 (PMJ22TS4_76660) | rpsR | 7440975..7441250 (-) | 276 | WP_006678722.1 | 30S ribosomal protein S18 | - |
| ACKTWR_RS37820 (PMJ22TS4_76670) | ssbA | 7441271..7441765 (-) | 495 | WP_213429270.1 | single-stranded DNA-binding protein | Machinery gene |
| ACKTWR_RS37825 (PMJ22TS4_76680) | rpsF | 7441813..7442100 (-) | 288 | WP_168178522.1 | 30S ribosomal protein S6 | - |
| ACKTWR_RS37830 | - | 7442376..7442575 (+) | 200 | Protein_7449 | YjzC family protein | - |
| ACKTWR_RS37840 (PMJ22TS4_76690) | - | 7443289..7443507 (-) | 219 | WP_213429269.1 | DUF951 domain-containing protein | - |
| ACKTWR_RS37845 (PMJ22TS4_76700) | - | 7443497..7444426 (-) | 930 | WP_213429268.1 | mechanosensitive ion channel family protein | - |
| ACKTWR_RS37850 (PMJ22TS4_76710) | - | 7444431..7444706 (-) | 276 | WP_213429267.1 | DUF3343 domain-containing protein | - |
| ACKTWR_RS37855 (PMJ22TS4_76720) | yyaC | 7444813..7445400 (+) | 588 | WP_213429266.1 | spore protease YyaC | - |
| ACKTWR_RS37860 (PMJ22TS4_76730) | - | 7445397..7445858 (-) | 462 | WP_373871484.1 | DUF4446 family protein | - |
| ACKTWR_RS37865 (PMJ22TS4_76740) | - | 7445952..7447121 (-) | 1170 | WP_213429264.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| ACKTWR_RS37870 (PMJ22TS4_76750) | - | 7447340..7448194 (-) | 855 | WP_213429263.1 | ParB/RepB/Spo0J family partition protein | - |
| ACKTWR_RS37875 (PMJ22TS4_76760) | - | 7448187..7448948 (-) | 762 | WP_006678734.1 | ParA family protein | - |
| ACKTWR_RS37880 (PMJ22TS4_76770) | noc | 7449143..7449958 (-) | 816 | WP_213429262.1 | nucleoid occlusion protein | - |
| ACKTWR_RS37885 (PMJ22TS4_76780) | - | 7450229..7450660 (-) | 432 | WP_213429261.1 | hypothetical protein | - |
| ACKTWR_RS37890 (PMJ22TS4_76790) | - | 7450693..7450878 (-) | 186 | WP_213429260.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18070.87 Da Isoelectric Point: 5.0078
>NTDB_id=108596 ACKTWR_RS37820 WP_213429270.1 7441271..7441765(-) (ssbA) [Paenibacillus melissococcoides strain J22TS4]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEVIADNVRFLESNRDSGGRRDDMGGGYGGGQPNNNSRPYGGGGSSQSRGPAADPFSDDGRPIDISDD
DLPF
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEVIADNVRFLESNRDSGGRRDDMGGGYGGGQPNNNSRPYGGGGSSQSRGPAADPFSDDGRPIDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=108596 ACKTWR_RS37820 WP_213429270.1 7441271..7441765(-) (ssbA) [Paenibacillus melissococcoides strain J22TS4]
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCTGTGAC
GCAATTTACGTTGGCGGTCGATCGTCCGTTCTCGAACCAGAATGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTCACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTATTTGCGCAAAGGTCGGCTAACGGCCGTGGAAGGCCGAATCCAAGTCCGC
AGTTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAATGTGCGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGACGTGACGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCGCGGCCATATGGCG
GAGGAGGCTCTAGCCAGTCCCGCGGTCCGGCAGCGGATCCATTCTCTGACGACGGCAGACCGATCGATATATCTGATGAT
GATTTGCCATTTTAA
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCTGTGAC
GCAATTTACGTTGGCGGTCGATCGTCCGTTCTCGAACCAGAATGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTCACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTATTTGCGCAAAGGTCGGCTAACGGCCGTGGAAGGCCGAATCCAAGTCCGC
AGTTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAATGTGCGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGACGTGACGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCGCGGCCATATGGCG
GAGGAGGCTCTAGCCAGTCCCGCGGTCCGGCAGCGGATCCATTCTCTGACGACGGCAGACCGATCGATATATCTGATGAT
GATTTGCCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.567 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
49.412 |
100 |
0.512 |
| ssb | Neisseria meningitidis MC58 |
36.413 |
100 |
0.409 |
| ssb | Neisseria gonorrhoeae MS11 |
36.413 |
100 |
0.409 |
| ssb | Glaesserella parasuis strain SC1401 |
33.702 |
100 |
0.372 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.692 |
63.415 |
0.366 |