Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACJVG6_RS01415 Genome accession   NZ_CP177180
Coordinates   263173..265269 (+) Length   698 a.a.
NCBI ID   WP_002886545.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 258173..270269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS01390 trkA 258263..259612 (-) 1350 WP_002886536.1 Trk system potassium transporter TrkA -
  ACJVG6_RS01395 - 259890..260399 (+) 510 WP_002886541.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  ACJVG6_RS01400 - 260710..261267 (+) 558 WP_002886542.1 ECF transporter S component -
  ACJVG6_RS01405 - 261270..261920 (+) 651 WP_002886543.1 phosphatase PAP2 family protein -
  ACJVG6_RS01410 comR 262099..262998 (+) 900 WP_002886544.1 helix-turn-helix transcriptional regulator Regulator
  ACJVG6_RS01415 comA 263173..265269 (+) 2097 WP_002886545.1 peptide cleavage/export ABC transporter Regulator
  ACJVG6_RS01420 - 265380..265712 (+) 333 WP_002886546.1 DUF805 domain-containing protein -
  ACJVG6_RS01425 - 265764..266183 (-) 420 WP_224119000.1 hypothetical protein -
  ACJVG6_RS01430 - 266571..267086 (+) 516 WP_002886548.1 AmiS/UreI family transporter -
  ACJVG6_RS01435 - 267111..267413 (+) 303 WP_002886558.1 urease subunit gamma -
  ACJVG6_RS01440 - 267425..267736 (+) 312 WP_002886559.1 urease subunit beta -
  ACJVG6_RS01445 ureC 267752..269470 (+) 1719 WP_002886560.1 urease subunit alpha -
  ACJVG6_RS01450 ureE 269611..270063 (+) 453 WP_002886561.1 urease accessory protein UreE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 78336.31 Da        Isoelectric Point: 9.2047

>NTDB_id=1085851 ACJVG6_RS01415 WP_002886545.1 263173..265269(+) (comA) [Streptococcus salivarius strain MRD-KRBY]
MSKYPYISQVDQRDCGVAALAMILKHYGSSYSLAYLRELAQTSREGTSALGLVEAAKQLGLETQAIRADLDLFKQENLSY
PFIVHVVKEGGLQHYYTVFGQIKGQLVIGDPDPSKKVIKMPLEEFAKEWTGVALFFVPGEAYTKYKEDVPGLLSFLPILF
RRKGLIAVIVLLSFLVTLVNIIGSYYLQAIIDRLIPQGAYNLLTMISLGLCISYLAQQVFTFFKDYLLHRLGNYLSIAVI
LPYIKHVLSLPISFFSSRRTGEITSRFGDANTIIDALASTILSIFLDVTIVMTLAVALIVQNQSLFVMTLTVVPLYVLII
VAFYKLFEKENYQLMEANSQVNTAVIDDLRGIETLKSLRVEERRYREIEVKFHDYLKKSLSKAKWQLTQDGLKTGVQLVS
NVFILCYGAQLVIEGQLSAGQLITYNMLLNYFTTPLINIINLQSKIQQAKVANNRLQEVYVVDKEEKGKLKELSFKQLAF
KGVSHRFSYQQETLSKIDLTIHKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAISHAELRQMVTYVPQQTYV
FTGTILENLLLGFEGEVDEKKLLKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLAIARALLSKQPILIFDEATS
GLDSDTESRVMANLAKIKRTMIFIAHRNSVRQHVSRVVTMVSGQIESDSPNFNPFQFI

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=1085851 ACJVG6_RS01415 WP_002886545.1 263173..265269(+) (comA) [Streptococcus salivarius strain MRD-KRBY]
ATGTCAAAATATCCATATATTTCACAGGTTGATCAGCGTGATTGTGGTGTCGCTGCCTTGGCCATGATTCTTAAACACTA
TGGTTCATCTTATAGTTTAGCTTATTTGCGAGAGTTGGCTCAGACTTCTCGTGAAGGTACTTCTGCGCTTGGTTTGGTGG
AAGCGGCCAAGCAGTTGGGTCTTGAAACTCAGGCTATTCGTGCGGATTTAGACTTATTTAAACAAGAAAACCTATCTTAT
CCTTTTATTGTACATGTGGTTAAAGAAGGTGGGCTGCAACATTATTATACGGTGTTTGGTCAAATCAAGGGGCAGCTTGT
TATTGGTGATCCAGATCCTAGCAAGAAGGTCATTAAAATGCCCTTAGAGGAATTTGCCAAAGAGTGGACGGGAGTTGCTC
TCTTTTTTGTTCCAGGAGAAGCCTATACTAAATACAAAGAAGATGTACCTGGACTTCTTTCATTTTTACCAATTTTGTTT
CGTCGTAAGGGTTTGATTGCGGTTATTGTCTTATTAAGTTTTCTAGTGACCCTTGTTAATATTATTGGTTCTTATTATTT
GCAAGCTATTATCGACCGCTTGATTCCTCAGGGGGCCTATAATCTTCTGACCATGATTTCGCTAGGCTTATGTATCTCTT
ATCTTGCTCAACAAGTTTTTACTTTTTTCAAAGATTATCTTCTACATCGATTGGGTAATTACCTGTCCATTGCTGTCATT
CTTCCTTATATCAAGCATGTCCTTTCCTTACCTATTAGTTTCTTTAGTTCACGTCGTACTGGTGAAATCACGTCACGTTT
TGGAGATGCCAACACCATTATCGATGCTCTAGCTTCAACGATTTTATCGATTTTCCTAGATGTGACCATTGTGATGACTC
TAGCTGTGGCTCTTATTGTACAAAATCAGTCACTTTTTGTGATGACTCTCACAGTAGTTCCTCTTTATGTTTTAATCATT
GTGGCATTCTATAAGCTTTTTGAGAAAGAAAATTATCAATTGATGGAGGCAAATAGTCAGGTCAATACCGCTGTTATTGA
TGATTTGCGAGGTATTGAAACCTTAAAATCCTTGAGGGTTGAGGAAAGACGCTATCGGGAAATTGAGGTGAAATTCCATG
ACTATTTGAAGAAGTCTTTGTCTAAGGCCAAGTGGCAATTAACGCAGGATGGTCTAAAGACAGGGGTTCAGTTAGTTTCC
AATGTCTTTATCCTCTGCTATGGGGCACAATTGGTCATAGAAGGGCAACTATCTGCAGGTCAGTTGATTACCTATAATAT
GTTGTTGAATTATTTTACAACTCCTTTAATTAATATCATCAATCTCCAATCTAAAATTCAGCAAGCCAAAGTCGCCAATA
ATCGTCTTCAAGAAGTTTATGTTGTGGACAAGGAAGAAAAAGGAAAACTTAAAGAGTTATCTTTTAAACAACTTGCTTTT
AAAGGAGTCAGTCACCGTTTTAGTTATCAGCAAGAGACTCTTAGTAAGATTGATTTAACGATTCATAAGGGTGAGAAAAT
CGCCCTCATGGGTAAAAGTGGATCTGGAAAAACGACCTTAGCTAAAATGTTGTCAGGTTATTATACGAAATCTAGTGGTC
ATGTAACCCTAGATAAAGATGCTATTAGCCATGCGGAGTTGCGTCAAATGGTGACCTACGTTCCTCAGCAGACCTATGTG
TTTACGGGAACCATTTTAGAAAATCTGCTATTAGGATTTGAAGGAGAAGTTGACGAGAAAAAGCTTCTTAAAGTTTGCCA
ACAAGCTGATATCTTAGAGGATATTCAAAAAATGCCACTAGGCTTTCAGACCCAAGTATCTGAAGACGGTGGTCTATCAG
GTGGTCAAAAACAACGCTTGGCTATAGCGAGGGCTCTCTTGTCCAAACAGCCTATCTTGATTTTTGACGAAGCTACCAGT
GGTCTCGATAGTGATACTGAAAGCAGGGTCATGGCTAATCTTGCTAAGATTAAACGAACAATGATTTTTATTGCTCACCG
CAATAGTGTCCGTCAACATGTCAGTCGTGTAGTGACCATGGTGAGTGGCCAGATTGAGTCAGACAGTCCTAATTTCAATC
CATTCCAGTTTATTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(167-436)

Peptidase C39 family (Peptidase_C39)

(3-139)

ABC transporter (ABC_tran)

(494-640)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

53.401

98.997

0.529
  comA Streptococcus gordonii str. Challis substr. CH1

52.73

99.713

0.526
  comA Streptococcus mitis NCTC 12261

52.967

98.997

0.524
  comA Streptococcus pneumoniae Rx1

52.822

98.997

0.523
  comA Streptococcus pneumoniae D39

52.822

98.997

0.523
  comA Streptococcus pneumoniae R6

52.822

98.997

0.523
  comA Streptococcus pneumoniae TIGR4

52.677

98.997

0.521
  comA/nlmT Streptococcus mutans UA159

50.29

98.854

0.497

Multiple sequence alignment