Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C645_RS06710 Genome accession   NZ_CP008740
Coordinates   1305838..1307367 (-) Length   509 a.a.
NCBI ID   WP_005647634.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1300838..1312367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS06675 (C645_06785) - 1301868..1302419 (+) 552 WP_046067883.1 hypothetical protein -
  C645_RS06680 (C645_06790) - 1302412..1302900 (+) 489 WP_046067745.1 hypothetical protein -
  C645_RS06685 - 1303076..1303195 (+) 120 WP_005641687.1 Com family DNA-binding transcriptional regulator -
  C645_RS06690 (C645_06800) - 1303252..1304097 (+) 846 WP_046067746.1 hypothetical protein -
  C645_RS06695 (C645_06805) - 1304137..1304400 (-) 264 WP_005640694.1 hypothetical protein -
  C645_RS06700 (C645_06810) - 1304638..1304970 (+) 333 WP_046067747.1 surface lipoprotein assembly modifier -
  C645_RS06705 (C645_06815) deoC 1305133..1305804 (+) 672 WP_046067748.1 deoxyribose-phosphate aldolase -
  C645_RS06710 (C645_06820) comM 1305838..1307367 (-) 1530 WP_005647634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C645_RS06715 (C645_06825) yihA 1307482..1308099 (-) 618 WP_011272391.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  C645_RS06720 (C645_06830) - 1308204..1309070 (+) 867 WP_032824635.1 VirK/YbjX family protein -
  C645_RS06725 (C645_06835) oppF 1309110..1310108 (-) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  C645_RS06730 (C645_06840) - 1310105..1311076 (-) 972 WP_046067749.1 ABC transporter ATP-binding protein -
  C645_RS06735 (C645_06845) oppC 1311086..1312021 (-) 936 WP_046067750.1 oligopeptide ABC transporter permease OppC -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55918.45 Da        Isoelectric Point: 9.8668

>NTDB_id=108540 C645_RS06710 WP_005647634.1 1305838..1307367(-) (comM) [Haemophilus influenzae 2019]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSVQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=108540 C645_RS06710 WP_005647634.1 1305838..1307367(-) (comM) [Haemophilus influenzae 2019]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCACCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCTGCATCGGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATTGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCTCAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATCGGACAACAGCACGCTAAACGTGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCAGGTACAGGGAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTGCCT
GAGATGACAGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCGCACCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGC
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCAAAAATTCAATTTCCGGCTCGTTTTCAATTAGTGGC
AGCAATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGCACTTCACCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGACTTGTCTATTGAAGTGCCTTTACTACCACAAGGTAGCTTGCAAAAT
ACAGGCGATCGTGGCGAAACCAGCGTGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae O1 biovar El Tor strain E7946

67.258

99.607

0.67
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  comM Acinetobacter baylyi ADP1

49.301

98.428

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment