Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACH87_RS01545 Genome accession   NZ_AP029019
Coordinates   349206..350750 (-) Length   514 a.a.
NCBI ID   WP_338796957.1    Uniprot ID   -
Organism   Acidovorax sp. DW039     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 344206..355750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH87_RS01525 (ACDW_03030) - 344965..346533 (+) 1569 WP_338796953.1 acyl CoA:acetate/3-ketoacid CoA transferase -
  AACH87_RS01530 (ACDW_03040) - 346758..347273 (-) 516 WP_338796954.1 MarR family winged helix-turn-helix transcriptional regulator -
  AACH87_RS01535 (ACDW_03050) - 347396..348298 (-) 903 WP_338796955.1 LysR family transcriptional regulator -
  AACH87_RS01540 (ACDW_03060) - 348424..349203 (+) 780 WP_338796956.1 SDR family oxidoreductase -
  AACH87_RS01545 (ACDW_03070) comM 349206..350750 (-) 1545 WP_338796957.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACH87_RS01550 (ACDW_03080) - 350964..351695 (+) 732 WP_338796958.1 TorF family putative porin -
  AACH87_RS01555 (ACDW_03090) glnK 351739..352077 (+) 339 WP_005800325.1 P-II family nitrogen regulator -
  AACH87_RS01560 (ACDW_03100) amt 352110..353648 (+) 1539 WP_338796960.1 ammonium transporter -
  AACH87_RS01565 (ACDW_03110) glcE 353882..355000 (+) 1119 WP_338796962.1 glycolate oxidase subunit GlcE -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54137.78 Da        Isoelectric Point: 7.5776

>NTDB_id=108109 AACH87_RS01545 WP_338796957.1 349206..350750(-) (comM) [Acidovorax sp. DW039]
MSLALVQSRALLGLQAPPVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNAGLEFPHNKRITVNLAPADLPKDSG
RFDLPIAMGILAASGQVDAQRLQGYEFAGELSLSGELRPVRGALATSLALAAQQVRVQMVLPPGSAEEAALVPDAQVVRA
RHLLDVVRAFLPPGSTAGGDADVDNDGWCRLQPTPLSAAATGPDMADVKGQAAAKRALEIAAAGGHSVLMLGPPGSGKSM
LAQRFAGLLPPMTVTEALESAAVASLAGRFDPSRWGVRPTGQPHHTASAVALVGGGSPPKPGEISLAHQGVLFLDELPEF
PRAALEALREPLETGHITISRAAQRADFPARFQLVAAMNPCPCGFLGSSQRACRCTPDQVSRYQGKLSGPLLDRIDLHVD
VPALPAEQLLKAPQGEGTEAIRERVVQARQRAMQRQGSTNQALQGQAIDEHLHLDDTAAKFLNTTAARLGWSARSTHRAL
KVARTIADLAGAERTEVSHVAEAVQYRRGLHAPG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=108109 AACH87_RS01545 WP_338796957.1 349206..350750(-) (comM) [Acidovorax sp. DW039]
ATGAGTCTTGCATTGGTGCAAAGCCGCGCCCTTCTGGGGCTTCAGGCACCGCCCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCTTCACGCTGGTGGGTTTGGCGGACGTGGAAGTGAAGGAAGCGCGCGAGCGGGTACGTTCCGCCCTTC
AGAACGCGGGGTTGGAGTTCCCCCACAACAAGCGCATCACCGTCAACCTGGCACCGGCAGACCTTCCCAAGGATTCAGGC
CGGTTTGACTTGCCCATCGCCATGGGCATCCTGGCCGCCAGCGGGCAGGTGGACGCGCAGCGGCTGCAGGGGTACGAATT
TGCGGGCGAACTGTCCCTGTCGGGCGAATTGCGCCCGGTGCGCGGCGCGCTGGCCACCAGTCTGGCCCTGGCAGCGCAGC
AAGTGCGCGTGCAGATGGTGCTGCCGCCCGGCAGCGCCGAGGAAGCAGCGCTGGTGCCCGATGCCCAGGTCGTGCGCGCG
CGCCACCTGCTGGACGTGGTGCGGGCTTTTCTGCCACCGGGCAGCACCGCCGGTGGCGATGCTGATGTAGACAACGACGG
CTGGTGCCGCCTGCAGCCCACCCCACTCTCTGCAGCCGCCACCGGCCCCGACATGGCCGATGTGAAAGGCCAGGCTGCCG
CCAAGCGGGCGCTGGAGATTGCAGCAGCCGGGGGGCATAGCGTGCTGATGCTGGGGCCACCGGGCTCCGGCAAATCCATG
CTGGCCCAGCGCTTTGCCGGGCTGCTGCCGCCCATGACCGTGACCGAGGCGCTGGAGAGCGCCGCCGTGGCCAGCCTGGC
CGGGCGCTTTGACCCGAGCCGCTGGGGCGTACGGCCCACGGGGCAGCCGCATCACACGGCATCGGCGGTTGCACTGGTCG
GAGGCGGCTCACCCCCCAAACCCGGAGAAATCTCCCTGGCCCATCAAGGCGTGTTGTTTTTGGACGAGCTGCCGGAGTTT
CCCCGGGCCGCGCTGGAGGCCCTGCGCGAACCGCTGGAGACAGGGCACATCACCATCTCCCGCGCGGCGCAGCGGGCGGA
TTTTCCGGCACGCTTCCAGCTGGTGGCGGCCATGAACCCCTGCCCTTGCGGCTTCCTCGGGTCCAGCCAGCGGGCCTGCC
GCTGCACGCCCGATCAGGTGTCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATAGACCTGCATGTGGAT
GTGCCCGCCCTGCCCGCAGAGCAACTGCTCAAGGCACCGCAGGGAGAAGGCACCGAGGCCATTCGCGAGCGGGTGGTGCA
GGCCCGGCAACGCGCCATGCAACGCCAGGGCAGCACCAACCAGGCGCTGCAGGGCCAGGCCATTGACGAGCACCTGCACT
TGGACGACACCGCCGCCAAATTCCTGAACACCACGGCAGCCCGGCTGGGCTGGTCTGCACGCAGCACCCACCGCGCCCTG
AAGGTGGCGCGGACCATTGCCGATCTGGCGGGTGCCGAGCGCACCGAGGTCAGCCATGTGGCGGAAGCGGTGCAATACCG
GCGTGGGCTGCACGCGCCCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.362

100

0.514
  comM Vibrio cholerae strain A1552

51.468

99.416

0.512
  comM Glaesserella parasuis strain SC1401

50.778

100

0.508
  comM Vibrio campbellii strain DS40M4

50.685

99.416

0.504
  comM Legionella pneumophila str. Paris

49.903

100

0.502
  comM Legionella pneumophila strain ERS1305867

49.903

100

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.582

100

0.43

Multiple sequence alignment