Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK2T8_RS22980 Genome accession   NZ_CP176513
Coordinates   4340542..4341009 (-) Length   155 a.a.
NCBI ID   WP_036655661.1    Uniprot ID   A0AAP5JTP9
Organism   Paenibacillus larvae subsp. larvae strain B-3650     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4335542..4346009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2T8_RS22945 - 4336361..4337278 (-) 918 WP_036657285.1 DUF2232 domain-containing protein -
  ACK2T8_RS22950 - 4337683..4338018 (-) 336 WP_036655655.1 hypothetical protein -
  ACK2T8_RS22955 - 4338251..4338583 (+) 333 WP_023482396.1 PadR family transcriptional regulator -
  ACK2T8_RS22960 - 4338665..4339030 (+) 366 WP_023482397.1 hypothetical protein -
  ACK2T8_RS22965 - 4339037..4339651 (+) 615 WP_036655658.1 type 1 glutamine amidotransferase domain-containing protein -
  ACK2T8_RS22970 - 4339666..4339936 (-) 271 Protein_4486 NCS2 family permease -
  ACK2T8_RS22975 rpsR 4340216..4340518 (-) 303 WP_309555204.1 30S ribosomal protein S18 -
  ACK2T8_RS22980 ssbA 4340542..4341009 (-) 468 WP_036655661.1 single-stranded DNA-binding protein Machinery gene
  ACK2T8_RS22985 rpsF 4341053..4341340 (-) 288 WP_023482401.1 30S ribosomal protein S6 -
  ACK2T8_RS22990 - 4341542..4341727 (+) 186 WP_023482402.1 YjzC family protein -
  ACK2T8_RS22995 - 4341733..4341996 (+) 264 WP_036655664.1 hypothetical protein -
  ACK2T8_RS23005 - 4342299..4342508 (-) 210 WP_023482403.1 DUF951 domain-containing protein -
  ACK2T8_RS23010 - 4342510..4343400 (-) 891 WP_023482404.1 mechanosensitive ion channel family protein -
  ACK2T8_RS23015 - 4343440..4343691 (-) 252 WP_024095527.1 DUF3343 domain-containing protein -
  ACK2T8_RS23020 yyaC 4343789..4344406 (+) 618 WP_309555211.1 spore protease YyaC -
  ACK2T8_RS23025 - 4344378..4344860 (-) 483 WP_158225702.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17554.35 Da        Isoelectric Point: 4.8103

>NTDB_id=1080540 ACK2T8_RS22980 WP_036655661.1 4340542..4341009(-) (ssbA) [Paenibacillus larvae subsp. larvae strain B-3650]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPYMNQQTRERETDFINIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYENNEGRKVYVTEIVADNVRFLESNNAGNRNNDEGSYSNAGYGGGSRSGGSQQQDPFLDDSKPIDISDDDLPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1080540 ACK2T8_RS22980 WP_036655661.1 4340542..4341009(-) (ssbA) [Paenibacillus larvae subsp. larvae strain B-3650]
TTGCTTAACCGTGTGATTCTGATCGGCAGGCTGACAAGAGACCCGGAATTGCGATACACTCCATCCGGTGTGGCTGTTAC
CCAATTTACCCTGGCGGTAGACCGTCCGTATATGAACCAGCAAACGCGTGAGCGGGAGACAGATTTCATTAATATCGTGA
CGTGGAGACAGCTGGCTGAGACTTGTGCCAACTACCTGCGGAAAGGCCGTTTGACGGCGGTAGAAGGAAGAATTCAAGTG
CGTAATTATGAGAACAATGAGGGCCGCAAAGTATACGTGACCGAAATTGTGGCTGATAATGTGCGGTTCCTTGAATCGAA
TAATGCCGGAAACCGCAATAACGACGAAGGGTCTTATTCTAATGCAGGATACGGTGGCGGAAGCCGAAGCGGTGGATCAC
AACAGCAAGATCCGTTCCTCGATGATAGCAAGCCGATTGATATTTCAGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.601

100

0.587
  ssb Latilactobacillus sakei subsp. sakei 23K

46.199

100

0.51
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.413
  ssb Neisseria meningitidis MC58

36.158

100

0.413
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.286

67.742

0.368
  ssb Glaesserella parasuis strain SC1401

31.638

100

0.361

Multiple sequence alignment