Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACKWPP_RS05695 Genome accession   NZ_CP176418
Coordinates   1084124..1084966 (+) Length   280 a.a.
NCBI ID   WP_409374346.1    Uniprot ID   -
Organism   Streptococcus suis strain KKAHC02     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1079124..1089966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKWPP_RS05665 (ACKWPP_05665) trhA 1079868..1080518 (-) 651 WP_014735830.1 PAQR family membrane homeostasis protein TrhA -
  ACKWPP_RS05670 (ACKWPP_05670) - 1080508..1081059 (-) 552 WP_044675003.1 DUF1836 domain-containing protein -
  ACKWPP_RS05675 (ACKWPP_05675) - 1081167..1082819 (-) 1653 WP_044675002.1 FAD-dependent oxidoreductase -
  ACKWPP_RS05680 (ACKWPP_05680) - 1082816..1083130 (-) 315 WP_409374344.1 rhodanese-like domain-containing protein -
  ACKWPP_RS05685 (ACKWPP_05685) - 1083237..1083497 (+) 261 WP_024401829.1 metal-sensitive transcriptional regulator -
  ACKWPP_RS05690 (ACKWPP_05690) - 1083508..1084065 (+) 558 WP_409374345.1 sugar O-acetyltransferase -
  ACKWPP_RS05695 (ACKWPP_05695) dprA 1084124..1084966 (+) 843 WP_409374346.1 DNA-processing protein DprA Machinery gene
  ACKWPP_RS05700 (ACKWPP_05700) topA 1085059..1087152 (+) 2094 WP_004195696.1 type I DNA topoisomerase -
  ACKWPP_RS05705 (ACKWPP_05705) rplJ 1087729..1088223 (+) 495 WP_002936486.1 50S ribosomal protein L10 -
  ACKWPP_RS05710 (ACKWPP_05710) rplL 1088289..1088654 (+) 366 WP_002936483.1 50S ribosomal protein L7/L12 -
  ACKWPP_RS05715 (ACKWPP_05715) - 1088861..1089820 (+) 960 WP_409374347.1 DUF6017 domain-containing protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31204.06 Da        Isoelectric Point: 8.4498

>NTDB_id=1080063 ACKWPP_RS05695 WP_409374346.1 1084124..1084966(+) (dprA) [Streptococcus suis strain KKAHC02]
MNNFELFKWKKAGLTNLNVNKVLAYQEKHGKNLTLRNVAVVSECKNPVLFMENYKKLDTKACREEFNKYPSFSILDDIYP
LALKQIFNPPVLLFYQGDLELLEKSKLAVVGTRNASKNGIQSVQKIIKELSNRFVIVSGLARGIDTAAHIASLKNGGQTI
AVIGTGLDNIYPKENKDLQTYIGKHHLVLTEYEAGAQPLKYHFPERNRIIAGLVEGLVVCEAKMRSGSLITCERALEEGR
EVYAIPGSIMDGKSDGCHHLIQEGAKCVTSGLDIISEYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1080063 ACKWPP_RS05695 WP_409374346.1 1084124..1084966(+) (dprA) [Streptococcus suis strain KKAHC02]
ATGAATAATTTTGAATTGTTTAAATGGAAAAAAGCAGGTTTGACCAATCTTAATGTGAATAAAGTTTTGGCCTATCAAGA
AAAACACGGAAAAAATTTGACCTTGCGAAATGTCGCTGTAGTGTCTGAATGTAAAAATCCAGTGCTATTTATGGAAAATT
ATAAGAAGCTAGATACAAAAGCCTGTCGCGAGGAATTTAATAAGTATCCATCATTTTCAATTTTAGATGACATCTATCCT
TTGGCGCTCAAACAGATTTTCAATCCACCTGTACTTTTGTTTTATCAAGGGGATTTAGAATTGCTAGAAAAATCAAAGCT
GGCAGTTGTTGGTACACGAAATGCCAGTAAAAATGGTATCCAATCTGTTCAGAAAATTATCAAAGAATTGAGCAATCGTT
TTGTCATTGTTAGTGGTTTGGCAAGAGGAATTGACACAGCTGCTCATATTGCTAGCCTGAAAAATGGTGGACAAACCATT
GCCGTTATTGGAACTGGTTTAGATAATATTTATCCAAAAGAAAATAAAGATTTGCAGACCTATATTGGAAAACACCATTT
AGTATTAACAGAGTATGAAGCTGGTGCTCAGCCACTCAAATACCATTTCCCAGAACGTAACCGCATCATTGCTGGATTGG
TAGAAGGTCTGGTAGTCTGCGAAGCTAAAATGCGGTCTGGTAGCTTGATTACCTGCGAACGTGCCTTGGAAGAAGGAAGA
GAAGTCTATGCTATTCCAGGTTCCATTATGGACGGAAAATCAGATGGTTGTCATCATCTGATTCAAGAGGGAGCAAAGTG
CGTTACATCAGGCTTGGACATCATTTCTGAGTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-61)

DNA recombination-mediator protein A (DNA_processg_A)

(73-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae D39

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae R6

63.214

100

0.632
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

63.214

100

0.632
  dprA/cilB/dalA Streptococcus mitis SK321

63.214

100

0.632
  dprA Lactococcus lactis subsp. cremoris KW2

58.929

100

0.589
  dprA Bacillus subtilis subsp. subtilis str. 168

43.321

98.929

0.429
  dprA Legionella pneumophila strain ERS1305867

41.7

88.214

0.368

Multiple sequence alignment