Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACJZU6_RS01545 Genome accession   NZ_CP175534
Coordinates   316598..318127 (-) Length   509 a.a.
NCBI ID   WP_080159074.1    Uniprot ID   A0A1T5I5J3
Organism   Photobacterium piscicola strain WVL24019     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 311598..323127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJZU6_RS01515 (ACJZU6_01515) - 312242..312898 (-) 657 WP_080159080.1 PAQR family membrane homeostasis protein TrhA -
  ACJZU6_RS01520 (ACJZU6_01520) - 313055..313732 (-) 678 WP_107277146.1 FadR/GntR family transcriptional regulator -
  ACJZU6_RS01525 (ACJZU6_01525) - 314078..314278 (+) 201 WP_080159078.1 hypothetical protein -
  ACJZU6_RS01530 (ACJZU6_01530) - 314436..314702 (+) 267 WP_080159077.1 YihD family protein -
  ACJZU6_RS01535 (ACJZU6_01535) - 314865..315851 (+) 987 WP_080159076.1 serine/threonine protein kinase -
  ACJZU6_RS01540 (ACJZU6_01540) - 315930..316532 (+) 603 WP_080159075.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACJZU6_RS01545 (ACJZU6_01545) comM 316598..318127 (-) 1530 WP_080159074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACJZU6_RS01550 (ACJZU6_01550) ilvG 318518..320164 (+) 1647 WP_080159073.1 acetolactate synthase 2 catalytic subunit -
  ACJZU6_RS01555 (ACJZU6_01555) ilvM 320168..320416 (+) 249 WP_080159072.1 acetolactate synthase 2 small subunit -
  ACJZU6_RS01560 (ACJZU6_01560) ilvE 320437..321369 (+) 933 WP_327770141.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55196.59 Da        Isoelectric Point: 8.9151

>NTDB_id=1077905 ACJZU6_RS01545 WP_080159074.1 316598..318127(-) (comM) [Photobacterium piscicola strain WVL24019]
MTLAIVHSRACVGVEAPPVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIINAQFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPSDKLAQYEFIGELALSGDLRAVKGALPAALAALKAKRCLIVPDHNGDQVALVAQKQHKSAPSL
LAVCGFLCGQQQLQLYLQPHVITPATTNEQRDMQDIIGQQQGKRALEIAAAGSHNLLLLGPPGTGKTMLASRLRDLLPPM
THEEAIETAAVASLTQQSLHQGNWLNRPFRTPHHSSSMAALVGGGSVPKPGEISLAHNGLLFLDEMPEFERKVLDSLREP
LESGQIVISRATAKTTFPARFQLIGALNPSPTGYYEGNQSRTNPQAILRYLSRLSGPLLDRFDMSLEIPALPRGTLTTGG
DRGEPSSVIKARVDQARERMLARCGKVNALLSTRELDKYCGLSFKDAEFLENALHQLGLSIRAYHRIIKVARTIADLAEQ
DQIQRSHLAEALGYRAMDRLLKQLSSQVI

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1077905 ACJZU6_RS01545 WP_080159074.1 316598..318127(-) (comM) [Photobacterium piscicola strain WVL24019]
ATGACACTTGCTATTGTTCATAGTCGCGCTTGTGTGGGCGTGGAAGCCCCACCAGTAACAGTTGAGGTCCATTTAAGTAA
TGGAATGCCCAGTTTCACACTGGTTGGTTTACCAGAAACTACCGTAAAAGAAGCTAAAGATCGTGTACGAAGCGCGATTA
TCAATGCTCAATTTGAATTTCCATCACGGCGAATTACGGTCAATTTAGCCCCTGCTGATTTACCCAAAGAAGGTGGACGG
TTTGACTTACCGATTGCGCTTGGCATTTTAGCGGCATCAGGGCAAATTCCTTCTGATAAATTAGCGCAGTATGAGTTTAT
TGGTGAATTAGCATTATCGGGTGATTTACGGGCTGTTAAAGGTGCATTACCGGCGGCATTGGCTGCATTAAAAGCCAAGC
GGTGTTTAATTGTGCCTGACCATAATGGTGATCAAGTGGCGTTAGTGGCGCAAAAACAACATAAATCAGCCCCTAGTTTG
TTAGCTGTATGTGGTTTTTTGTGTGGTCAGCAACAGTTACAGTTATATCTTCAACCGCATGTGATAACGCCTGCAACTAC
GAATGAACAACGTGATATGCAAGATATTATTGGTCAACAACAAGGAAAACGCGCTTTAGAAATAGCTGCCGCGGGAAGTC
ATAATTTATTGCTACTTGGTCCACCAGGCACAGGAAAAACTATGTTGGCTTCTCGTTTACGGGATTTATTACCACCAATG
ACCCACGAAGAAGCCATTGAAACCGCCGCGGTAGCTTCTTTGACTCAGCAATCATTGCATCAAGGTAATTGGCTTAACCG
CCCTTTTCGTACACCGCACCATTCAAGTTCAATGGCAGCCCTTGTAGGTGGGGGCTCAGTGCCTAAACCGGGTGAAATTT
CACTCGCGCACAATGGGCTATTATTTTTAGATGAAATGCCTGAATTTGAGAGAAAAGTGCTAGATTCATTGCGTGAGCCG
TTAGAGTCAGGACAAATTGTAATTTCACGAGCAACGGCAAAAACGACCTTTCCCGCTCGGTTTCAATTAATAGGTGCATT
AAACCCTAGCCCGACAGGGTATTACGAAGGCAACCAATCTCGAACTAACCCGCAAGCTATTTTACGTTATTTAAGCCGTT
TATCGGGACCATTGCTAGATCGGTTTGATATGTCATTAGAAATTCCCGCATTGCCCCGTGGCACACTAACCACTGGAGGT
GATCGTGGAGAACCGAGTTCAGTTATTAAGGCGCGAGTTGATCAGGCTCGTGAGCGCATGCTGGCCCGTTGTGGCAAGGT
AAATGCCTTACTTTCGACCCGTGAATTAGATAAATATTGCGGATTATCGTTTAAAGACGCCGAGTTTTTAGAAAATGCAT
TGCATCAACTTGGATTATCGATTCGTGCTTATCATCGTATTATTAAGGTTGCGCGTACGATTGCAGATTTGGCCGAGCAG
GATCAGATTCAGCGTTCACATCTAGCTGAAGCATTAGGGTATCGAGCGATGGATAGATTGTTGAAACAACTTAGCAGTCA
GGTCATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T5I5J3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

77.21

100

0.772
  comM Vibrio cholerae strain A1552

76.621

100

0.766
  comM Glaesserella parasuis strain SC1401

64.637

100

0.646
  comM Haemophilus influenzae Rd KW20

63.529

100

0.637
  comM Legionella pneumophila str. Paris

50.701

98.035

0.497
  comM Legionella pneumophila strain ERS1305867

50.701

98.035

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.353

100

0.424

Multiple sequence alignment