Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ACJD0W_RS04625 | Genome accession | NZ_CP174456 |
| Coordinates | 987744..988031 (+) | Length | 95 a.a. |
| NCBI ID | WP_171052001.1 | Uniprot ID | - |
| Organism | Vibrio rotiferianus strain BD182406 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 982744..993031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACJD0W_RS04615 | - | 985257..985529 (+) | 273 | WP_010447007.1 | HU family DNA-binding protein | - |
| ACJD0W_RS04620 | ppiD | 985741..987600 (+) | 1860 | WP_045392827.1 | peptidylprolyl isomerase | - |
| ACJD0W_RS04625 | comEA | 987744..988031 (+) | 288 | WP_171052001.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ACJD0W_RS04630 | rrtA | 988116..988667 (-) | 552 | WP_038887521.1 | rhombosortase | - |
| ACJD0W_RS04635 | - | 988671..989288 (+) | 618 | WP_010447014.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ACJD0W_RS04640 | - | 989301..990635 (-) | 1335 | WP_407833110.1 | anti-phage deoxyguanosine triphosphatase | - |
| ACJD0W_RS04645 | yfbR | 990639..991223 (-) | 585 | WP_010447019.1 | 5'-deoxynucleotidase | - |
| ACJD0W_RS04650 | - | 991338..992552 (-) | 1215 | WP_010447021.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 95 a.a. Molecular weight: 10166.77 Da Isoelectric Point: 6.9772
>NTDB_id=1077113 ACJD0W_RS04625 WP_171052001.1 987744..988031(+) (comEA) [Vibrio rotiferianus strain BD182406]
MKWILSVLLCVLAPVSYGVAAESNSKHEGIEITVNVNTASAEELATLLKGIGLKKANDIVEYRQENGPFKTAADLSNVKG
IGSATVEKNLQRILL
MKWILSVLLCVLAPVSYGVAAESNSKHEGIEITVNVNTASAEELATLLKGIGLKKANDIVEYRQENGPFKTAADLSNVKG
IGSATVEKNLQRILL
Nucleotide
Download Length: 288 bp
>NTDB_id=1077113 ACJD0W_RS04625 WP_171052001.1 987744..988031(+) (comEA) [Vibrio rotiferianus strain BD182406]
ATGAAGTGGATTCTATCAGTACTGTTATGCGTGCTTGCACCAGTTAGCTATGGAGTCGCAGCTGAGAGCAACAGTAAACA
TGAAGGCATTGAAATTACGGTTAATGTAAATACAGCTTCGGCAGAGGAGCTAGCGACGCTACTGAAAGGTATCGGGTTAA
AGAAAGCGAATGATATCGTAGAGTATCGCCAAGAGAACGGCCCATTTAAAACTGCGGCTGATTTGTCGAATGTTAAAGGT
ATAGGGTCCGCTACGGTTGAAAAGAATCTTCAGCGTATCTTGTTATAA
ATGAAGTGGATTCTATCAGTACTGTTATGCGTGCTTGCACCAGTTAGCTATGGAGTCGCAGCTGAGAGCAACAGTAAACA
TGAAGGCATTGAAATTACGGTTAATGTAAATACAGCTTCGGCAGAGGAGCTAGCGACGCTACTGAAAGGTATCGGGTTAA
AGAAAGCGAATGATATCGTAGAGTATCGCCAAGAGAACGGCCCATTTAAAACTGCGGCTGATTTGTCGAATGTTAAAGGT
ATAGGGTCCGCTACGGTTGAAAAGAATCTTCAGCGTATCTTGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
67.368 |
100 |
0.674 |
| comEA | Vibrio campbellii strain DS40M4 |
66.316 |
100 |
0.663 |
| comEA | Vibrio cholerae C6706 |
73.913 |
72.632 |
0.537 |
| comEA | Vibrio cholerae strain A1552 |
73.913 |
72.632 |
0.537 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |
| comE | Neisseria gonorrhoeae MS11 |
42.857 |
88.421 |
0.379 |