Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACJGJ0_RS08210 Genome accession   NZ_CP174366
Coordinates   1919284..1919403 (-) Length   39 a.a.
NCBI ID   WP_033482837.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXBS06     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914284..1924403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGJ0_RS08195 (ACJGJ0_08195) - 1915463..1917076 (+) 1614 WP_003488599.1 PAS domain-containing sensor histidine kinase -
  ACJGJ0_RS08200 (ACJGJ0_08200) pilR 1917405..1918799 (+) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  ACJGJ0_RS08205 (ACJGJ0_08205) - 1918997..1919152 (-) 156 WP_003488595.1 hypothetical protein -
  ACJGJ0_RS08210 (ACJGJ0_08210) pilB 1919284..1919403 (-) 120 WP_033482837.1 hypothetical protein Machinery gene
  ACJGJ0_RS08215 (ACJGJ0_08215) pilB 1919500..1921236 (-) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJGJ0_RS08220 (ACJGJ0_08220) pilA2 1921278..1921691 (-) 414 WP_005921365.1 pilin Machinery gene
  ACJGJ0_RS08225 (ACJGJ0_08225) comP 1921788..1922216 (-) 429 WP_005921364.1 pilin Machinery gene
  ACJGJ0_RS08230 (ACJGJ0_08230) pilC 1922561..1923820 (+) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4205.86 Da        Isoelectric Point: 9.0113

>NTDB_id=1076884 ACJGJ0_RS08210 WP_033482837.1 1919284..1919403(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GXBS06]
MQIAEAAQAIGIRDLRQSALMKAAHGVTNLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1076884 ACJGJ0_RS08210 WP_033482837.1 1919284..1919403(-) (pilB) [Xanthomonas citri pv. mangiferaeindicae strain GXBS06]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAACCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487
  pilB Acinetobacter baumannii D1279779

46.154

100

0.462
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385
  pilB Vibrio cholerae strain A1552

42.857

89.744

0.385

Multiple sequence alignment