Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACJGJ0_RS08200 Genome accession   NZ_CP174366
Coordinates   1917405..1918799 (+) Length   464 a.a.
NCBI ID   WP_003488597.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain GXBS06     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912405..1923799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGJ0_RS08185 (ACJGJ0_08185) sucD 1913162..1914037 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  ACJGJ0_RS08190 (ACJGJ0_08190) sucC 1914062..1915231 (-) 1170 WP_003488601.1 ADP-forming succinate--CoA ligase subunit beta -
  ACJGJ0_RS08195 (ACJGJ0_08195) - 1915463..1917076 (+) 1614 WP_003488599.1 PAS domain-containing sensor histidine kinase -
  ACJGJ0_RS08200 (ACJGJ0_08200) pilR 1917405..1918799 (+) 1395 WP_003488597.1 sigma-54 dependent transcriptional regulator Regulator
  ACJGJ0_RS08205 (ACJGJ0_08205) - 1918997..1919152 (-) 156 WP_003488595.1 hypothetical protein -
  ACJGJ0_RS08210 (ACJGJ0_08210) pilB 1919284..1919403 (-) 120 WP_033482837.1 hypothetical protein Machinery gene
  ACJGJ0_RS08215 (ACJGJ0_08215) pilB 1919500..1921236 (-) 1737 WP_033482835.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACJGJ0_RS08220 (ACJGJ0_08220) pilA2 1921278..1921691 (-) 414 WP_005921365.1 pilin Machinery gene
  ACJGJ0_RS08225 (ACJGJ0_08225) comP 1921788..1922216 (-) 429 WP_005921364.1 pilin Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50147.60 Da        Isoelectric Point: 6.5718

>NTDB_id=1076883 ACJGJ0_RS08200 WP_003488597.1 1917405..1918799(+) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GXBS06]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1076883 ACJGJ0_RS08200 WP_003488597.1 1917405..1918799(+) (pilR) [Xanthomonas citri pv. mangiferaeindicae strain GXBS06]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCGGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCTTGCCCGCGCACGGCGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAATCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment