Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NELON_RS02665 Genome accession   NZ_CP007726
Coordinates   529386..530888 (+) Length   500 a.a.
NCBI ID   WP_003774028.1    Uniprot ID   D4DTB4
Organism   Neisseria elongata subsp. glycolytica ATCC 29315     
Function   promote branch migration (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524386..535888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NELON_RS02640 (NELON_02780) - 524760..525188 (+) 429 WP_003774023.1 EamA family transporter -
  NELON_RS02645 (NELON_02785) - 525266..526489 (-) 1224 WP_040666265.1 aspartate kinase -
  NELON_RS02650 (NELON_02790) - 526721..527413 (+) 693 WP_040666249.1 hypothetical protein -
  NELON_RS02655 (NELON_02795) dsbA2 527663..528361 (-) 699 WP_003774026.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NELON_RS02660 (NELON_02800) - 528388..529155 (-) 768 WP_003774027.1 SPOR domain-containing protein -
  NELON_RS02665 (NELON_02805) comM 529386..530888 (+) 1503 WP_003774028.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NELON_RS02670 (NELON_02810) - 530931..531767 (-) 837 WP_003774030.1 alpha/beta hydrolase -
  NELON_RS02685 (NELON_02825) - 532161..533315 (-) 1155 WP_040666251.1 class I SAM-dependent methyltransferase -
  NELON_RS02690 (NELON_02830) - 533637..534092 (+) 456 WP_003774032.1 division/cell wall cluster transcriptional repressor MraZ -
  NELON_RS02695 (NELON_02835) rsmH 534089..535057 (+) 969 WP_041961293.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  NELON_RS02700 (NELON_02840) ftsL 535073..535333 (+) 261 WP_003774035.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53233.32 Da        Isoelectric Point: 7.5379

>NTDB_id=107679 NELON_RS02665 WP_003774028.1 529386..530888(+) (comM) [Neisseria elongata subsp. glycolytica ATCC 29315]
MTFSLVNSRALYGMDAPLVEVETHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIAVGILAASGQVAADKLDGYEFAGELALSGLLRPVRGALAMAWQGMRAGRAFVLPAENAAQAAALKGVSAFGAVSL
GQVAAHLNGIEMLPPAESAVSLRPSENAAQPDLADVKGQHTARMALEIAAAGGHSLLMTGPPGTGKSMLAQRLPGIMPPL
DDEELVAVWALQSLLSQQGEGQSAKRPFRSPHHSASTVALVGGGNSNNLRPGEISLAHKGILFLDELPEFDRKVLEALRE
PLETGEIHISRAARQAVFPAEFQLVAAMNPCPCGYLGHPTKPCRCTPDSISRYRGKISGPLLDRIDLIVEIPVLSAAELS
DMKPGESSADVLRRVLQARDRQQARQGKPNSKLLPTDLDKPDLISPEAKAVLAGMLEKLSLSARSFHRILRVARTLADLV
GDETVLPAHVYRAVAFRRAF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=107679 NELON_RS02665 WP_003774028.1 529386..530888(+) (comM) [Neisseria elongata subsp. glycolytica ATCC 29315]
ATGACTTTTTCCCTTGTAAACAGTCGGGCTTTGTACGGCATGGACGCGCCTTTGGTGGAGGTGGAAACCCATTTGGCCAA
CGGTTTGCCCGCATTCAATATTGTCGGCCTGCCGGATACCGAGGTAAAGGAAAGCCGCGATCGTGTGCGGGCGGCGATTA
TTCAGAGCGGGTTTGATTTTCCGGCCAAAAAAATCACCGTCAATCTGGCTCCGGCCGATTTGCCCAAAGAGTCGGGCCGT
TTCGATTTGCCGATAGCGGTCGGTATTTTGGCAGCTTCGGGTCAGGTGGCGGCGGACAAGTTGGATGGATACGAATTCGC
CGGCGAATTGGCGTTATCCGGCCTGCTCAGGCCGGTGCGCGGTGCGTTGGCTATGGCTTGGCAGGGAATGAGGGCGGGGC
GCGCCTTCGTATTGCCGGCAGAAAATGCGGCGCAGGCGGCGGCTTTGAAGGGTGTCAGCGCGTTCGGGGCCGTATCGTTG
GGACAGGTGGCCGCGCATTTGAACGGTATCGAAATGCTGCCGCCTGCCGAGTCTGCGGTGTCTTTGAGGCCGTCTGAAAA
TGCCGCACAACCCGATTTGGCCGATGTCAAAGGGCAGCATACGGCGCGGATGGCATTGGAAATCGCGGCGGCCGGCGGCC
ACAGCCTTTTGATGACGGGGCCGCCGGGAACGGGTAAGTCGATGCTGGCGCAGCGGCTGCCCGGCATTATGCCGCCTTTG
GATGATGAAGAGTTGGTGGCGGTGTGGGCCTTACAGTCGCTGTTGTCCCAACAGGGCGAAGGGCAGTCGGCCAAGAGGCC
GTTTAGGAGTCCGCATCACAGCGCGAGTACGGTGGCTTTGGTGGGGGGTGGTAACAGCAATAATCTTCGGCCTGGTGAGA
TTTCATTGGCCCACAAGGGAATTTTGTTTCTCGATGAGCTGCCGGAGTTTGACCGCAAGGTGTTGGAGGCGTTGCGCGAA
CCTTTGGAAACGGGGGAAATCCATATTTCGCGTGCGGCGCGGCAGGCGGTGTTTCCGGCCGAATTTCAATTGGTGGCGGC
GATGAACCCCTGTCCGTGCGGCTATCTCGGCCACCCGACCAAGCCCTGCCGTTGTACGCCCGACAGCATTTCGCGGTATC
GCGGGAAAATTTCCGGACCTTTGCTGGATAGGATTGATTTGATTGTGGAAATACCTGTGTTATCGGCTGCCGAACTGTCG
GATATGAAGCCCGGCGAGAGCAGTGCCGATGTTTTGCGGAGGGTGTTGCAGGCGCGGGACAGACAGCAGGCGAGGCAGGG
GAAGCCCAACAGCAAATTGCTGCCGACGGATTTGGACAAGCCTGATTTAATCAGCCCGGAAGCGAAGGCGGTGTTGGCGG
GTATGCTGGAAAAGTTGTCGCTTTCCGCGCGCAGTTTCCACCGTATTTTGCGCGTTGCGCGTACGCTTGCCGATTTGGTC
GGAGATGAAACCGTACTGCCCGCCCATGTTTATCGGGCGGTGGCATTTAGGCGGGCGTTTTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DTB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

52.716

99.4

0.524
  comM Vibrio cholerae O1 biovar El Tor strain E7946

51.102

99.8

0.51
  comM Vibrio cholerae strain A1552

51.102

99.8

0.51
  comM Vibrio campbellii strain DS40M4

51.102

99.8

0.51
  comM Haemophilus influenzae Rd KW20

48.214

100

0.486
  comM Glaesserella parasuis strain SC1401

47.41

100

0.476
  comM Legionella pneumophila str. Paris

45.85

100

0.464
  comM Legionella pneumophila strain ERS1305867

45.85

100

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.865

100

0.422