Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AABA82_RS20225 Genome accession   NZ_AP028930
Coordinates   4568595..4570175 (-) Length   526 a.a.
NCBI ID   WP_338299075.1    Uniprot ID   -
Organism   Pandoraea sputorum strain THI4931     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4563595..4575175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA82_RS20200 (THI4931_39840) - 4564078..4565427 (+) 1350 WP_039402096.1 sigma-54-dependent transcriptional regulator -
  AABA82_RS20205 (THI4931_39850) - 4565489..4566151 (-) 663 WP_224786738.1 carbonic anhydrase -
  AABA82_RS20210 (THI4931_39860) - 4566547..4567071 (-) 525 WP_039395336.1 TlpA disulfide reductase family protein -
  AABA82_RS20215 (THI4931_39870) - 4567168..4567899 (-) 732 WP_338299073.1 hypothetical protein -
  AABA82_RS20220 (THI4931_39890) - 4567997..4568545 (+) 549 WP_338299074.1 hypothetical protein -
  AABA82_RS20225 (THI4931_39900) comM 4568595..4570175 (-) 1581 WP_338299075.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AABA82_RS20230 (THI4931_39910) - 4570602..4570850 (-) 249 WP_039395339.1 accessory factor UbiK family protein -
  AABA82_RS20235 (THI4931_39920) - 4571246..4572091 (+) 846 WP_039395342.1 TorF family putative porin -
  AABA82_RS20240 (THI4931_39930) - 4572105..4572443 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  AABA82_RS20245 (THI4931_39940) amt 4572469..4574004 (+) 1536 WP_039395345.1 ammonium transporter -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 55426.37 Da        Isoelectric Point: 7.9014

>NTDB_id=107379 AABA82_RS20225 WP_338299075.1 4568595..4570175(-) (comM) [Pandoraea sputorum strain THI4931]
MSLAVVSSRAITGMSARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRPIRGGLAMASAMASEPSTRALVLPAGSAQEAALVEEATVYGAR
ALLDVCAHLAAPDVAIPLPRAVVQGSPNDRAADIAGGELDVARVSAPGATPPGSSIADMIDIKGQEHAKRALEVAAAGGH
HLLLYGPPGTGKSMLATRLVGLLPSLCKSQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSTPRPGEIS
LAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSDAVARYRN
RLSGPLLDRIDLHVEVPALSAETFAAPATGERTEVVAIRVRHAQTRQLKRQGQLNCGLSNRALEAQCPLGPAAQEVLHRA
VTQHHWSARTYHRVLRVARTVADLAECDAIDASHIAEAVQYREAPT

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=107379 AABA82_RS20225 WP_338299075.1 4568595..4570175(-) (comM) [Pandoraea sputorum strain THI4931]
ATGTCATTGGCAGTGGTGAGCAGCCGCGCGATCACCGGTATGTCGGCACGTCCGGTGACAGTCGAAGTCCATCTGGCGAA
CGGCTTGCCGGGACTGTCGCTGGTGGGGCTGCCCGATACCGAAGTGAAGGAAAGTCGCGAGCGGGTGCGCTCGGCGTTGC
AGAACAGCCGGTTTGAATTCCCAGCGCGACGCATCACCGTCAATCTGGCCCCGGCCGATCTGCCGAAGGCGTCGGGCTGT
TTTGATCTACCGATTGCGCTCGGCATTCTGGCGGCGAGCGGTCAGTTACCGGAGGCAGGGCTGCGCACGCACGAGTTCGC
GGGCGAGTTGTCGCTTACCGGCGAGTTGCGCCCTATTCGCGGTGGCCTGGCGATGGCGAGCGCGATGGCATCGGAGCCGT
CGACACGCGCGCTCGTGCTTCCCGCCGGGAGCGCACAAGAAGCTGCGCTGGTGGAGGAAGCCACGGTCTATGGCGCACGC
GCTTTACTCGACGTCTGCGCCCACCTCGCGGCGCCGGATGTCGCGATACCGCTCCCACGTGCCGTGGTGCAGGGTTCGCC
TAACGACAGGGCAGCGGACATAGCGGGGGGCGAACTCGACGTCGCGCGAGTCAGTGCGCCGGGCGCCACGCCCCCGGGCA
GCAGCATCGCGGACATGATCGACATCAAAGGGCAGGAGCACGCCAAACGAGCGCTGGAAGTGGCGGCGGCGGGTGGCCAT
CACCTTTTGCTTTACGGGCCACCCGGTACGGGCAAATCGATGCTGGCGACGCGGCTCGTCGGCCTGTTGCCGTCGCTCTG
CAAATCTCAGGCCGTGGAAGCGGCAACGCTCGCAAGTCTGAGCGCGCAGGGCTTCGATATGCGGCATTGGGGACGCCGGC
CCTTTCGTGCGCCGCATCACACGGCATCGGCGGCGGCCCTTGTGGGGGGCGGGAGCACGCCGCGACCGGGGGAAATCAGT
CTGGCGCATCGCGGCGTGCTGTTCCTCGACGAACTGCCGGAATTTCAGCGTCGTGTCCTGGAAGTGCTGCGTGAACCACT
GGAACTGGGGCATGTCACGATTTCGCGCGCCGGTGGGCATGCGACGTTTCCCGCGGCATTTCAACTGGTGGCGGCAATGA
ACCCGTGTCCCTGCGGTGACCTGGGGCACCCGTCACGCAACTGCCGATGCACGAGTGACGCGGTAGCGCGTTACCGCAAC
CGGCTCTCCGGGCCGTTGCTCGACCGCATCGACCTGCACGTGGAAGTGCCTGCACTCAGCGCGGAAACATTCGCCGCTCC
AGCCACCGGCGAGCGCACTGAAGTCGTGGCCATACGAGTAAGACATGCGCAGACGCGCCAGCTAAAGCGTCAGGGTCAGT
TGAACTGCGGTCTGTCGAATCGTGCGCTGGAAGCGCAATGTCCACTGGGACCGGCGGCGCAGGAGGTGCTGCACCGTGCG
GTGACGCAACACCATTGGTCGGCCCGCACCTACCACCGGGTGTTGCGCGTGGCACGCACTGTGGCGGACCTCGCAGAATG
CGACGCAATCGATGCGTCTCACATCGCCGAGGCGGTGCAGTATCGAGAAGCGCCGACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.052

99.43

0.508
  comM Vibrio campbellii strain DS40M4

48.948

99.43

0.487
  comM Haemophilus influenzae Rd KW20

48.571

99.81

0.485
  comM Glaesserella parasuis strain SC1401

48.282

99.62

0.481
  comM Legionella pneumophila str. Paris

47.619

99.81

0.475
  comM Legionella pneumophila strain ERS1305867

47.619

99.81

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.81

99.81

0.437

Multiple sequence alignment