Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACI3EV_RS00045 Genome accession   NZ_CP173677
Coordinates   9568..10098 (-) Length   176 a.a.
NCBI ID   WP_337691792.1    Uniprot ID   -
Organism   Brachymonas sp. G13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4568..15098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3EV_RS00020 (ACI3EV_00020) - 4656..5645 (+) 990 WP_329769732.1 SPOR domain-containing protein -
  ACI3EV_RS00025 (ACI3EV_00025) - 5762..6424 (+) 663 WP_329769733.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACI3EV_RS00030 (ACI3EV_00030) lptA 6501..7076 (+) 576 WP_329769734.1 lipopolysaccharide transport periplasmic protein LptA -
  ACI3EV_RS00035 (ACI3EV_00035) lptB 7073..7840 (+) 768 WP_337691793.1 LPS export ABC transporter ATP-binding protein -
  ACI3EV_RS00040 (ACI3EV_00040) rpoN/rpoN1 7946..9487 (+) 1542 WP_329769736.1 RNA polymerase factor sigma-54 Machinery gene
  ACI3EV_RS00045 (ACI3EV_00045) ssb 9568..10098 (-) 531 WP_337691792.1 single-stranded DNA-binding protein Machinery gene
  ACI3EV_RS00050 (ACI3EV_00050) - 10255..11460 (-) 1206 WP_337691862.1 MFS transporter -
  ACI3EV_RS00055 (ACI3EV_00055) - 11591..13468 (-) 1878 WP_329769738.1 potassium transporter Kup -
  ACI3EV_RS00060 (ACI3EV_00060) - 13665..13907 (-) 243 WP_329769739.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACI3EV_RS00065 (ACI3EV_00065) pyrF 14021..14878 (-) 858 WP_329769740.1 orotidine-5'-phosphate decarboxylase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18994.08 Da        Isoelectric Point: 5.8025

>NTDB_id=1073645 ACI3EV_RS00045 WP_337691792.1 9568..10098(-) (ssb) [Brachymonas sp. G13]
MASVNKVILVGNLGRDPEIRTFPSGDQVANVTLATSDRWKDKQSGEMREHTEWHRLVFNGRLAEIVGQYLRKGSQIYVEG
SIRTRKWQDQATGQDRYATEIRVDQMQMLGKREGMGGQGGGYGDDEGGYGGGYGGGRAAAPRQQAPMAARPAAAPAAAQP
MSDAGGFGDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1073645 ACI3EV_RS00045 WP_337691792.1 9568..10098(-) (ssb) [Brachymonas sp. G13]
ATGGCATCTGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCCGCGACCCCGAAATCCGTACCTTCCCCAGTGGTGACCA
GGTCGCCAACGTCACGCTGGCCACTTCCGACCGCTGGAAGGACAAGCAATCCGGTGAAATGCGCGAGCACACCGAATGGC
ACCGCCTGGTGTTCAACGGCCGTCTGGCCGAAATCGTCGGCCAGTACCTGCGCAAGGGCAGCCAGATCTATGTCGAAGGC
AGCATCCGCACGCGCAAGTGGCAGGACCAGGCCACCGGCCAGGATCGCTACGCTACTGAAATCCGCGTAGACCAGATGCA
GATGCTGGGCAAGCGTGAAGGCATGGGCGGCCAGGGCGGCGGCTATGGTGACGATGAGGGCGGCTACGGTGGCGGTTACG
GCGGTGGTCGTGCCGCGGCACCGCGTCAGCAGGCTCCGATGGCTGCACGCCCGGCGGCTGCCCCCGCGGCCGCGCAGCCG
ATGAGCGACGCCGGTGGCTTTGGTGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.031

100

0.563
  ssb Vibrio cholerae strain A1552

51.099

100

0.528
  ssb Neisseria gonorrhoeae MS11

45.81

100

0.466
  ssb Neisseria meningitidis MC58

44.134

100

0.449

Multiple sequence alignment