Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACAM22_RS00170 Genome accession   NZ_AP028929
Coordinates   32110..32772 (+) Length   220 a.a.
NCBI ID   WP_261052230.1    Uniprot ID   A0AAT9FY68
Organism   Streptococcus sp. SN-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 27110..37772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS00145 (MASAN616_00250) tsf 27479..28519 (+) 1041 WP_369606774.1 translation elongation factor Ts -
  ACAM22_RS00150 (MASAN616_00260) cysK 28641..29567 (-) 927 WP_261052232.1 cysteine synthase A -
  ACAM22_RS00155 (MASAN616_00270) - 29664..30107 (-) 444 WP_050223247.1 PH domain-containing protein -
  ACAM22_RS00160 (MASAN616_00280) - 30123..30758 (-) 636 WP_084926268.1 YigZ family protein -
  ACAM22_RS00165 (MASAN616_00290) comFA/cflA 30815..32113 (+) 1299 WP_261052231.1 DEAD/DEAH box helicase Machinery gene
  ACAM22_RS00170 (MASAN616_00300) comFC/cflB 32110..32772 (+) 663 WP_261052230.1 ComF family protein Machinery gene
  ACAM22_RS00175 (MASAN616_00310) raiA 32852..33400 (+) 549 WP_261052229.1 ribosome-associated translation inhibitor RaiA -
  ACAM22_RS00180 (MASAN616_00320) - 33536..35509 (+) 1974 WP_261052228.1 DHH family phosphoesterase -
  ACAM22_RS00185 (MASAN616_00330) rplI 35506..35958 (+) 453 WP_000864214.1 50S ribosomal protein L9 -
  ACAM22_RS00190 (MASAN616_00340) dnaB 36002..37360 (+) 1359 WP_000852491.1 replicative DNA helicase -
  ACAM22_RS00195 (MASAN616_00350) - 37357..37623 (+) 267 WP_000128619.1 Veg family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25225.35 Da        Isoelectric Point: 7.7124

>NTDB_id=107299 ACAM22_RS00170 WP_261052230.1 32110..32772(+) (comFC/cflB) [Streptococcus sp. SN-1]
MKCLLCGQTMKIVLTFSSLLLLKNDVSCLCLDCDSTFEKIGEEYCPNCMKIGLSTKCQDCQFWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSAELKKYKEYQFVVIPLSPERLLERGFNQVEGLVEAAGFSFQDLLEKREERTSSS
KNRSERLATELPFFIKSGVTIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=107299 ACAM22_RS00170 WP_261052230.1 32110..32772(+) (comFC/cflB) [Streptococcus sp. SN-1]
ATGAAGTGTTTGTTATGTGGGCAGACTATGAAGATTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAAGAATGATGTCTC
CTGTCTTTGTTTAGATTGTGATTCTACTTTTGAGAAAATTGGAGAAGAGTACTGTCCAAACTGTATGAAAATAGGGTTGT
CAACAAAGTGTCAAGATTGTCAATTTTGGTGTAAAGAAGGAGTTGAGGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTTTTAAGAAAAGTGTTCGCTTCATTTTTAAGTGC
GGAGTTGAAAAAATACAAAGAGTATCAATTTGTCGTCATTCCCCTAAGCCCTGAAAGATTGCTTGAGAGGGGATTTAACC
AGGTTGAAGGTTTAGTTGAAGCAGCAGGGTTCTCTTTTCAAGACTTACTAGAGAAGAGAGAAGAGCGGACCAGTTCTTCT
AAAAATCGTTCAGAACGCTTGGCAACAGAACTTCCTTTCTTTATTAAAAGTGGAGTTACTATTCCTAAAAAAATCCTACT
TATAGATGACATTTACACTACGGGAACAACTATAAATCGTGTGAAGAAGCTGTTGGAAGAAGCTGGTGCTGAAGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(171-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

93.182

100

0.932
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus pneumoniae TIGR4

90.455

100

0.905
  comFC/cflB Streptococcus pneumoniae Rx1

90

100

0.9
  comFC/cflB Streptococcus pneumoniae D39

90

100

0.9
  comFC/cflB Streptococcus pneumoniae R6

90

100

0.9
  comFC Bacillus subtilis subsp. subtilis str. 168

36.404

100

0.377

Multiple sequence alignment