Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACIO03_RS04920 Genome accession   NZ_CP173231
Coordinates   1061562..1062662 (-) Length   366 a.a.
NCBI ID   WP_410679125.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1056562..1067662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS04905 (ACIO03_04905) glpQ 1057668..1058762 (+) 1095 WP_264256084.1 glycerophosphodiester phosphodiesterase -
  ACIO03_RS04910 (ACIO03_04910) ftsY 1059308..1060801 (-) 1494 WP_410681550.1 signal recognition particle-docking protein FtsY -
  ACIO03_RS04915 (ACIO03_04915) rsmD 1060957..1061565 (+) 609 WP_264245187.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACIO03_RS04920 (ACIO03_04920) dprA 1061562..1062662 (-) 1101 WP_410679125.1 DNA-processing protein DprA Machinery gene
  ACIO03_RS04925 (ACIO03_04925) pilF/pilF2 1062807..1063349 (-) 543 WP_110479719.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ACIO03_RS04930 (ACIO03_04930) - 1063383..1064552 (-) 1170 WP_410679126.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  ACIO03_RS04935 (ACIO03_04935) - 1064859..1066430 (-) 1572 WP_410681551.1 tetratricopeptide repeat protein -
  ACIO03_RS04940 (ACIO03_04940) - 1066460..1067494 (-) 1035 WP_410679128.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 40922.76 Da        Isoelectric Point: 5.0734

>NTDB_id=1070984 ACIO03_RS04920 WP_410679125.1 1061562..1062662(-) (dprA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MITNEMLLRLLQIPKLGANTIQKILGEISFTQLLDYDEYAFKQIGWSEKQIQRWFYPERKFIDPALQWAESAGNFLLNFT
DEDYPYLLKQIPSAPPILFLQGNLTALSQPQIAIVGSRYCSNYGEYWAKYFASELSLAGFAITSGLALGIDGFCHQAVVD
IQGQTLAVLGSGLDKVYPAKHRRLAEQIIEHNGTLISEFLPAQPPVAENFPRRNRIISGLSLGTLIIEATERSGSLITAR
YALEQNREVFALPGNIQNGFSEGCHKLIKQGATLVESVTDILENIPHYQYVTPNYTEQKSPSSANEQLTSEPPSYPKLYA
QLSHIPISLDELSARLSLPIDVLLTQLLSLELQQLAVCENGLYRRS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1070984 ACIO03_RS04920 WP_410679125.1 1061562..1062662(-) (dprA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGATAACCAATGAGATGTTACTCCGTTTGCTCCAAATTCCTAAACTTGGAGCAAATACTATTCAAAAAATACTGGGTGA
AATTAGTTTTACACAGCTTTTAGATTATGATGAATACGCGTTTAAACAGATTGGTTGGTCAGAAAAGCAAATTCAACGTT
GGTTTTACCCAGAACGAAAATTCATTGATCCTGCGTTACAATGGGCAGAAAGTGCGGGTAATTTTTTGCTTAATTTTACC
GATGAAGATTACCCTTATTTGCTGAAGCAAATTCCCTCCGCTCCGCCGATTTTATTTTTGCAAGGAAATTTGACCGCACT
TTCTCAACCACAAATTGCAATAGTAGGTAGCCGTTATTGCTCGAATTATGGGGAATATTGGGCGAAGTATTTTGCTTCAG
AGTTGAGTCTTGCGGGCTTTGCGATAACCAGTGGGCTAGCTTTAGGGATCGACGGATTTTGTCATCAAGCCGTGGTGGAT
ATTCAAGGGCAAACGCTGGCGGTGCTTGGAAGTGGGTTGGATAAGGTGTATCCTGCAAAACATCGCCGTTTGGCTGAGCA
AATTATTGAGCATAACGGCACATTGATTTCCGAATTTCTCCCCGCGCAACCGCCCGTTGCGGAGAATTTCCCACGCCGAA
ACCGTATTATTAGCGGGCTTTCGCTTGGCACGCTAATTATTGAAGCCACCGAGCGGAGCGGTTCACTCATTACGGCTCGT
TATGCGTTGGAGCAAAACCGTGAGGTCTTTGCCTTGCCGGGCAATATTCAAAATGGCTTTAGTGAGGGCTGTCATAAGCT
CATCAAGCAAGGGGCAACATTAGTGGAGAGCGTGACGGATATTTTAGAAAATATCCCACATTATCAGTATGTTACACCGA
ATTATACCGAACAGAAATCGCCATCGTCGGCGAACGAGCAGCTAACTTCAGAGCCACCAAGTTATCCCAAACTTTACGCT
CAATTAAGCCACATTCCCATTAGCCTTGATGAACTTTCAGCCCGTTTGTCATTGCCGATTGATGTCTTATTAACCCAATT
ATTAAGTTTAGAATTGCAACAATTAGCGGTTTGTGAAAATGGGCTGTATCGGCGAAGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

62.703

100

0.634
  dprA Glaesserella parasuis strain SC1401

56.571

95.628

0.541
  dprA Vibrio cholerae strain A1552

43.443

100

0.434
  dprA Vibrio campbellii strain DS40M4

42.618

98.087

0.418
  dprA Legionella pneumophila strain ERS1305867

39.51

100

0.396
  dprA Acinetobacter baumannii strain A118

39.776

97.541

0.388

Multiple sequence alignment