Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACIO07_RS06315 | Genome accession | NZ_CP173228 |
| Coordinates | 1222389..1222820 (+) | Length | 143 a.a. |
| NCBI ID | WP_035687024.1 | Uniprot ID | A0A0F5ESJ8 |
| Organism | Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1217389..1227820
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIO07_RS06285 (ACIO07_06290) | - | 1217545..1218396 (-) | 852 | WP_410683427.1 | thymidylate synthase | - |
| ACIO07_RS06290 (ACIO07_06295) | lgt | 1218408..1219208 (-) | 801 | WP_017807046.1 | prolipoprotein diacylglyceryl transferase | - |
| ACIO07_RS06295 (ACIO07_06300) | - | 1219218..1220009 (-) | 792 | WP_410680657.1 | sulfite exporter TauE/SafE family protein | - |
| ACIO07_RS06300 (ACIO07_06305) | rppH | 1220012..1220605 (-) | 594 | WP_410683428.1 | RNA pyrophosphohydrolase | - |
| ACIO07_RS06305 (ACIO07_06310) | - | 1221177..1221596 (-) | 420 | WP_264256696.1 | hypothetical protein | - |
| ACIO07_RS06310 (ACIO07_06315) | ampD | 1221695..1222249 (-) | 555 | WP_410683429.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACIO07_RS06315 (ACIO07_06320) | pilA | 1222389..1222820 (+) | 432 | WP_035687024.1 | pilin | Machinery gene |
| ACIO07_RS06320 (ACIO07_06325) | pilB | 1222833..1224176 (+) | 1344 | WP_410683430.1 | GspE/PulE family protein | Machinery gene |
| ACIO07_RS06325 (ACIO07_06330) | - | 1224118..1225065 (-) | 948 | WP_200896145.1 | IS110 family transposase | - |
| ACIO07_RS06330 (ACIO07_06335) | pyrH | 1225655..1226371 (+) | 717 | WP_410683431.1 | UMP kinase | - |
| ACIO07_RS06335 (ACIO07_06340) | frr | 1226396..1226953 (+) | 558 | WP_017807054.1 | ribosome recycling factor | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 15205.70 Da Isoelectric Point: 9.8115
>NTDB_id=1070915 ACIO07_RS06315 WP_035687024.1 1222389..1222820(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
MQNPTHLKIKKGFTLIELMIVIAIVAILATIAIPAYQNYTKKAAISELIQAASPYRSEVELCIYNTGATTKCNAGSNGIQ
KKLTNKGKVASIDVQKGTITVKGKDNLSDITYSLKASGDASKGVSWTVNCGKSVEFFPAGFCG
Nucleotide
Download Length: 432 bp
>NTDB_id=1070915 ACIO07_RS06315 WP_035687024.1 1222389..1222820(+) (pilA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGCAAAACCCAACTCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACCATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAAGTAGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
ATGCAAAACCCAACTCATTTAAAAATCAAAAAAGGCTTTACTTTGATTGAACTGATGATCGTGATTGCGATTGTGGCGAT
TTTAGCGACCATTGCGATTCCTGCTTATCAAAATTACACTAAGAAAGCGGCAATATCTGAGCTAATTCAAGCCGCAAGCC
CCTATCGTTCAGAAGTAGAATTATGTATTTATAATACGGGAGCTACCACGAAATGTAATGCGGGTTCAAATGGAATTCAG
AAAAAATTAACGAATAAAGGGAAAGTGGCTTCTATTGATGTACAAAAAGGCACGATTACGGTTAAAGGAAAAGATAATCT
TTCTGATATTACTTATTCATTAAAAGCCAGTGGAGATGCCTCAAAAGGTGTATCTTGGACGGTAAATTGTGGAAAATCTG
TAGAGTTTTTCCCAGCGGGATTTTGCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae Rd KW20 |
59.31 |
100 |
0.601 |
| pilA | Haemophilus influenzae 86-028NP |
57.931 |
100 |
0.587 |
| pilA | Glaesserella parasuis strain SC1401 |
46.809 |
98.601 |
0.462 |
| pilA | Vibrio campbellii strain DS40M4 |
34.615 |
100 |
0.378 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.324 |
99.301 |
0.371 |