Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AADG46_RS10900 | Genome accession | NZ_AP028804 |
| Coordinates | 2392372..2392962 (-) | Length | 196 a.a. |
| NCBI ID | WP_000157688.1 | Uniprot ID | A0A655VUM8 |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2387372..2397962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS10880 (VNVC001_20640) | aroB | 2388293..2389378 (-) | 1086 | WP_000439803.1 | 3-dehydroquinate synthase | - |
| AADG46_RS10885 (VNVC001_20650) | aroK | 2389406..2389930 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| AADG46_RS10890 (VNVC001_20660) | pilQ | 2390117..2391838 (-) | 1722 | WP_162797396.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AADG46_RS10895 (VNVC001_20670) | pilP | 2391864..2392382 (-) | 519 | WP_138041023.1 | pilus assembly protein PilP | Machinery gene |
| AADG46_RS10900 (VNVC001_20680) | pilO | 2392372..2392962 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AADG46_RS10905 (VNVC001_20690) | pilN | 2392955..2393539 (-) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| AADG46_RS10910 (VNVC001_20700) | pilM | 2393529..2394545 (-) | 1017 | WP_172780299.1 | type IV pilus assembly protein PilM | Machinery gene |
| AADG46_RS10915 (VNVC001_20710) | - | 2394688..2397165 (+) | 2478 | WP_002044688.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22891.30 Da Isoelectric Point: 4.4169
>NTDB_id=106923 AADG46_RS10900 WP_000157688.1 2392372..2392962(-) (pilO) [Vibrio cholerae strain VN152]
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLLVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLPVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=106923 AADG46_RS10900 WP_000157688.1 2392372..2392962(-) (pilO) [Vibrio cholerae strain VN152]
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTTTGCAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGCTGCTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCCACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATTCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTCCGCCAGCTACCGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGGGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |