Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | AADG46_RS10895 | Genome accession | NZ_AP028804 |
| Coordinates | 2391864..2392382 (-) | Length | 172 a.a. |
| NCBI ID | WP_138041023.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2386864..2397382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS10880 (VNVC001_20640) | aroB | 2388293..2389378 (-) | 1086 | WP_000439803.1 | 3-dehydroquinate synthase | - |
| AADG46_RS10885 (VNVC001_20650) | aroK | 2389406..2389930 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| AADG46_RS10890 (VNVC001_20660) | pilQ | 2390117..2391838 (-) | 1722 | WP_162797396.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AADG46_RS10895 (VNVC001_20670) | pilP | 2391864..2392382 (-) | 519 | WP_138041023.1 | pilus assembly protein PilP | Machinery gene |
| AADG46_RS10900 (VNVC001_20680) | pilO | 2392372..2392962 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AADG46_RS10905 (VNVC001_20690) | pilN | 2392955..2393539 (-) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| AADG46_RS10910 (VNVC001_20700) | pilM | 2393529..2394545 (-) | 1017 | WP_172780299.1 | type IV pilus assembly protein PilM | Machinery gene |
| AADG46_RS10915 (VNVC001_20710) | - | 2394688..2397165 (+) | 2478 | WP_002044688.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19112.31 Da Isoelectric Point: 10.0857
>NTDB_id=106922 AADG46_RS10895 WP_138041023.1 2391864..2392382(-) (pilP) [Vibrio cholerae strain VN152]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVVQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVVQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=106922 AADG46_RS10895 WP_138041023.1 2391864..2392382(-) (pilP) [Vibrio cholerae strain VN152]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGTGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGTGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTGACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAGTATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
99.419 |
100 |
0.994 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |