Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACF1RT_RS00220 Genome accession   NZ_CP172847
Coordinates   30940..31521 (+) Length   193 a.a.
NCBI ID   WP_002265932.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 25940..36521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS00195 (ACF1RT_00195) - 26317..27285 (+) 969 WP_002263139.1 ribose-phosphate diphosphokinase -
  ACF1RT_RS00200 (ACF1RT_00200) - 27374..28549 (+) 1176 WP_002293595.1 pyridoxal phosphate-dependent aminotransferase -
  ACF1RT_RS00205 (ACF1RT_00205) recO 28539..29294 (+) 756 WP_002263137.1 DNA repair protein RecO -
  ACF1RT_RS00210 (ACF1RT_00210) plsX 29502..30500 (+) 999 WP_226711126.1 phosphate acyltransferase PlsX -
  ACF1RT_RS00215 (ACF1RT_00215) - 30502..30750 (+) 249 WP_002263135.1 acyl carrier protein -
  ACF1RT_RS00220 (ACF1RT_00220) comA 30940..31521 (+) 582 WP_002265932.1 ATP-binding cassette domain-containing protein Regulator
  ACF1RT_RS00225 (ACF1RT_00225) purC 31643..32350 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ACF1RT_RS00230 (ACF1RT_00230) - 32360..36085 (+) 3726 WP_019313005.1 phosphoribosylformylglycinamidine synthase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21344.31 Da        Isoelectric Point: 4.8856

>NTDB_id=1069050 ACF1RT_RS00220 WP_002265932.1 30940..31521(+) (comA) [Streptococcus mutans strain DPC6143]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLNRTIIFIAHRGS
VSYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1069050 ACF1RT_RS00220 WP_002265932.1 30940..31521(+) (comA) [Streptococcus mutans strain DPC6143]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTGCTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGAGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAACCTGTGTTGATTTTTGATGAGGCAACTAGTGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGAATCGCACGATTATTTTTATTGCTCACCGAGGCAGT
GTTTCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGACAGAATAAATCATCGTCCTTTCTC
ATTTTTGATGACGACTCTTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.337

96.891

0.497
  comA Streptococcus gordonii str. Challis substr. CH1

51.648

94.301

0.487
  comA/nlmT Streptococcus mutans UA159

49.468

97.409

0.482
  comA Streptococcus pneumoniae D39

49.727

94.819

0.472
  comA Streptococcus pneumoniae Rx1

49.727

94.819

0.472
  comA Streptococcus pneumoniae R6

49.727

94.819

0.472
  comA Streptococcus mitis SK321

48.634

94.819

0.461
  comA Streptococcus pneumoniae TIGR4

48.634

94.819

0.461

Multiple sequence alignment