Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAM54_RS01265 Genome accession   NZ_AP028669
Coordinates   286279..287835 (-) Length   518 a.a.
NCBI ID   WP_369649558.1    Uniprot ID   -
Organism   Variovorax sp. V93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 281279..292835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM54_RS01240 (GmRootV93_02460) - 282877..283362 (+) 486 WP_369651887.1 type II secretion system protein -
  ACAM54_RS01245 (GmRootV93_02470) - 283365..283763 (+) 399 WP_369649554.1 type II secretion system protein -
  ACAM54_RS01250 (GmRootV93_02480) - 283750..284460 (+) 711 WP_369649555.1 type II secretion system protein -
  ACAM54_RS01255 (GmRootV93_02490) - 284478..285383 (+) 906 WP_369649556.1 rhodanese-like domain-containing protein -
  ACAM54_RS01260 (GmRootV93_02500) - 285391..286248 (+) 858 WP_369649557.1 transglutaminase family protein -
  ACAM54_RS01265 (GmRootV93_02510) comM 286279..287835 (-) 1557 WP_369649558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAM54_RS01270 (GmRootV93_02520) - 288056..288877 (+) 822 WP_209500637.1 TorF family putative porin -
  ACAM54_RS01275 (GmRootV93_02530) glnK 288945..289283 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  ACAM54_RS01280 (GmRootV93_02540) - 289306..290841 (+) 1536 WP_186454156.1 ammonium transporter -
  ACAM54_RS01285 (GmRootV93_02550) - 291120..292058 (+) 939 WP_369649559.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 54118.95 Da        Isoelectric Point: 8.2056

>NTDB_id=106818 ACAM54_RS01265 WP_369649558.1 286279..287835(-) (comM) [Variovorax sp. V93]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLVETEVKEARERVRSAIQNAGLEFPNNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPAGSAQEAALVPGSEVYGA
RHLLDVVQRFMPEGAAPLQGEDRQQPPAADGWARVHAAAAAAAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPGS
GKSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLDE
FPEFARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRID
LHIEVPAVSAQQLIDAPAGESTASIRSRVVAAREFALQRQGSPNQALQAGAIDKHAALDDAARKFVYSAAAKLGWSARST
HRALKVARTVADLAGAESVEVVHVAEAVQYRRALRGIV

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=106818 ACAM54_RS01265 WP_369649558.1 286279..287835(-) (comM) [Variovorax sp. V93]
ATGAGCCTGTCTTTGGTGCAAAGCCGTGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTCGTCGGGCTGGTGGAGACCGAGGTCAAGGAGGCGCGCGAAAGGGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCCGGC
CGCTTCGACCTGCCGATCGCACTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCCGCGCTGCTGGCAGGCCACGAATT
TGCCGGCGAGCTCTCTCTTTCAGGCGAGCTGCGGCCCGTGCGCGGCGCGCTGGCCATGGCGCTGGCCCTGCACACGCGCG
GCATCGCGACGCGCCTGGTGCTGCCCGCCGGCAGCGCCCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTACGGCGCC
AGGCACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCCGCGCCGCTGCAGGGCGAGGATCGCCAGCAGCCGCC
CGCCGCGGACGGCTGGGCCCGGGTTCATGCCGCGGCCGCAGCGGCCGCGCCGCTCTATGCGGACCTGGCCGACGTCAAGG
GGCATGCGGGCGCCAAGCGCGCCCTCGAGATCGCCGCCGCGGGCGGGCACAGCCTGCTGATGGTCGGCGAGCCCGGCTCG
GGCAAGTCCATGCTGGCGCAGCGCTTTGCCGGGCTGCTGCCGCCCATGAGCGTGGACGAGGCGCTGGAGAGCGCGGCCGT
GGCCAGCCTGGCCGGCAGCTTCTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCTCACCACACGTCGAGCGCCG
TGGCGCTGGTGGGCGGCGGCTCGCCCCCGCGGCCGGGCGAGATCTCGCAGGCGCACCACGGCGTGCTCTTCCTGGACGAA
TTCCCGGAGTTCGCGCGCTCCGCGCTCGAGGCGCTGCGCGAGCCGCTGGAGACCGGCACCATCACCATCGCGCGCGCCGC
CCGTCGCGCCGAGTTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGACGC
TGAAGGCCTGCCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGAC
CTGCACATCGAAGTGCCCGCGGTATCGGCGCAGCAGCTCATCGATGCGCCCGCCGGCGAATCGACGGCCAGCATCCGCAG
CCGCGTGGTGGCCGCGCGCGAATTCGCCCTGCAGCGCCAGGGCAGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCGACA
AGCATGCTGCGCTCGACGATGCGGCCCGCAAGTTCGTCTACAGCGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGCACG
CATCGCGCGCTCAAGGTGGCGCGCACAGTGGCCGACCTGGCGGGCGCCGAATCGGTGGAGGTGGTGCATGTGGCGGAGGC
GGTGCAGTACCGCAGGGCGCTGCGCGGCATCGTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(208-412)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(419-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.487

99.035

0.5
  comM Legionella pneumophila strain ERS1305867

48.842

100

0.488
  comM Legionella pneumophila str. Paris

48.842

100

0.488
  comM Vibrio campbellii strain DS40M4

49.318

99.035

0.488
  comM Glaesserella parasuis strain SC1401

49.126

99.421

0.488
  comM Haemophilus influenzae Rd KW20

48.743

99.807

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.359

98.842

0.429

Multiple sequence alignment