Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFSN5_RS08910 Genome accession   NZ_CP172427
Coordinates   1936716..1937198 (-) Length   160 a.a.
NCBI ID   WP_165213393.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1931716..1942198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS08885 (ACFSN5_08885) rpoZ 1933536..1933853 (-) 318 WP_004229934.1 DNA-directed RNA polymerase subunit omega -
  ACFSN5_RS08890 (ACFSN5_08890) gmk 1933876..1934490 (-) 615 WP_165213389.1 guanylate kinase -
  ACFSN5_RS08895 (ACFSN5_08895) - 1934704..1935648 (+) 945 WP_165213391.1 magnesium transporter CorA family protein -
  ACFSN5_RS08900 (ACFSN5_08900) - 1935693..1936373 (+) 681 WP_004226573.1 DUF1129 domain-containing protein -
  ACFSN5_RS08905 (ACFSN5_08905) rpsR 1936416..1936655 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACFSN5_RS08910 (ACFSN5_08910) ssb 1936716..1937198 (-) 483 WP_165213393.1 single-stranded DNA-binding protein Machinery gene
  ACFSN5_RS08915 (ACFSN5_08915) rpsF 1937210..1937500 (-) 291 WP_165213395.1 30S ribosomal protein S6 -
  ACFSN5_RS08920 (ACFSN5_08920) - 1938027..1938257 (-) 231 WP_165213397.1 bacteriocin -
  ACFSN5_RS08925 (ACFSN5_08925) - 1938343..1938573 (-) 231 WP_398600662.1 bacteriocin -
  ACFSN5_RS08930 (ACFSN5_08930) - 1938644..1938898 (-) 255 WP_165213399.1 hypothetical protein -
  ACFSN5_RS08935 (ACFSN5_08935) - 1939236..1939409 (-) 174 WP_165213401.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  ACFSN5_RS08940 (ACFSN5_08940) comB/nlmE 1939662..1940585 (-) 924 WP_398600665.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17772.46 Da        Isoelectric Point: 4.9008

>NTDB_id=1067686 ACFSN5_RS08910 WP_165213393.1 1936716..1937198(-) (ssb) [Streptococcus sp. ZJ 1593]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRATREANGTGSYNAGGNTSSNFGGTQQQTTPNFGRDESPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1067686 ACFSN5_RS08910 WP_165213393.1 1936716..1937198(-) (ssb) [Streptococcus sp. ZJ 1593]
ATGATTAATAATGTCGTACTCGTGGGGCGCATGACTCGTGATGCAGAGCTTCGCTACACCCCGTCTAATCAAGCCGTTGC
AACCTTCAGCTTGGCTGTTAACCGCAACTTTAAAAACCAAAACGGTGAACGTGAGGCCGATTTCATCAACTGTGTGATTT
GGCGTCAGCAAGCCGAAAACTTGGCTAACTGGGCTAAGAAGGGAGCTTTGATTGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAGAACCAACAAGGTCAACGGGTTTATGTAACTGAAGTAGTCGCTGACAATTTCCAGCTTCTGGAAAGTCGTGC
AACGCGTGAAGCTAATGGCACAGGTTCCTATAATGCTGGTGGCAATACTTCGTCAAACTTTGGCGGTACTCAACAGCAAA
CAACACCGAACTTTGGCCGTGACGAAAGTCCTTTTGGCAATTCAAATCCAATGGATATTTCCGACGACGACCTTCCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.588

100

0.644
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.054

69.375

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

68.125

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

68.125

0.362

Multiple sequence alignment