Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   ACFSN5_RS08940 Genome accession   NZ_CP172427
Coordinates   1939662..1940585 (-) Length   307 a.a.
NCBI ID   WP_398600665.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1934662..1945585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS08895 (ACFSN5_08895) - 1934704..1935648 (+) 945 WP_165213391.1 magnesium transporter CorA family protein -
  ACFSN5_RS08900 (ACFSN5_08900) - 1935693..1936373 (+) 681 WP_004226573.1 DUF1129 domain-containing protein -
  ACFSN5_RS08905 (ACFSN5_08905) rpsR 1936416..1936655 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  ACFSN5_RS08910 (ACFSN5_08910) ssb 1936716..1937198 (-) 483 WP_165213393.1 single-stranded DNA-binding protein Machinery gene
  ACFSN5_RS08915 (ACFSN5_08915) rpsF 1937210..1937500 (-) 291 WP_165213395.1 30S ribosomal protein S6 -
  ACFSN5_RS08920 (ACFSN5_08920) - 1938027..1938257 (-) 231 WP_165213397.1 bacteriocin -
  ACFSN5_RS08925 (ACFSN5_08925) - 1938343..1938573 (-) 231 WP_398600662.1 bacteriocin -
  ACFSN5_RS08930 (ACFSN5_08930) - 1938644..1938898 (-) 255 WP_165213399.1 hypothetical protein -
  ACFSN5_RS08935 (ACFSN5_08935) - 1939236..1939409 (-) 174 WP_165213401.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  ACFSN5_RS08940 (ACFSN5_08940) comB/nlmE 1939662..1940585 (-) 924 WP_398600665.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  ACFSN5_RS08945 (ACFSN5_08945) comA/nlmT 1940600..1942903 (-) 2304 WP_165213258.1 peptide cleavage/export ABC transporter Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 35011.96 Da        Isoelectric Point: 10.5556

>NTDB_id=1067687 ACFSN5_RS08940 WP_398600665.1 1939662..1940585(-) (comB/nlmE) [Streptococcus sp. ZJ 1593]
MNPKLLESAEFYRRRYHNFATVLIVPLVILIVFIVVFLCFAKKEVTVISQGEVAPTEVLAIIQSGSDASIAQNKLDDNTK
VKKGDLLVRYNEETTPAQKNSQKEAIKERNKRLDKIEEKKEKKTKKKNKKLSKKARKKAEKKAKKKKDAKKKKRDEKDKK
ETAHVSLFAPDNGIIHTNPKYEGAHVIPQWSEIAQIYPDIQKTKTVLITYYVSSDDVVSMEEGQKTRLTVEKKGNDKMII
EGKITKVASSATSTKKGNLFKVTAKAKLSKKDSKLVKYGMTGKTVTVIDKKTYFDYFKDKLLHKMEN

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1067687 ACFSN5_RS08940 WP_398600665.1 1939662..1940585(-) (comB/nlmE) [Streptococcus sp. ZJ 1593]
ATGAATCCAAAATTACTCGAAAGTGCGGAATTTTACCGCCGCCGCTACCATAATTTTGCGACAGTGCTGATTGTGCCCTT
GGTTATCTTGATTGTTTTCATCGTTGTCTTCCTTTGTTTTGCTAAAAAGGAAGTCACGGTCATCTCTCAAGGTGAGGTGG
CCCCGACTGAGGTTTTAGCCATTATCCAGTCTGGCAGTGATGCTTCTATTGCTCAAAACAAATTGGATGACAACACCAAG
GTGAAAAAAGGGGATCTTTTGGTGCGATATAACGAGGAGACAACTCCTGCACAAAAGAATTCGCAAAAAGAAGCCATAAA
GGAACGCAATAAGCGTCTGGACAAAATAGAAGAGAAGAAAGAAAAGAAGACCAAGAAAAAAAACAAAAAGCTCTCTAAAA
AGGCCAGAAAAAAAGCTGAAAAAAAGGCTAAAAAGAAAAAAGATGCTAAGAAGAAAAAGCGCGATGAGAAAGATAAAAAA
GAAACGGCTCATGTCTCTCTCTTTGCGCCGGATAATGGCATTATCCATACCAATCCCAAGTACGAAGGGGCTCATGTCAT
TCCCCAATGGTCAGAAATTGCTCAAATTTATCCTGATATCCAAAAGACCAAGACGGTATTGATTACCTATTACGTGTCAT
CAGACGATGTGGTCTCAATGGAAGAAGGACAAAAGACTCGCTTGACAGTTGAGAAAAAAGGCAATGACAAGATGATTATT
GAAGGTAAGATCACTAAGGTTGCTTCTTCAGCCACGTCCACTAAAAAGGGAAATCTCTTTAAGGTGACTGCCAAGGCTAA
GCTCTCCAAAAAGGACAGCAAGCTCGTCAAATATGGCATGACTGGTAAGACCGTTACGGTAATTGATAAGAAGACCTACT
TTGACTACTTTAAAGATAAACTTCTGCATAAAATGGAGAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(167-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

65.798

100

0.658

Multiple sequence alignment