Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAM58_RS01715 Genome accession   NZ_AP028661
Coordinates   360512..362059 (-) Length   515 a.a.
NCBI ID   WP_369663963.1    Uniprot ID   -
Organism   Variovorax sp. V116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 355512..367059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM58_RS01705 (GmRootV116_03410) tagF 357549..358274 (+) 726 WP_369663961.1 type VI secretion system-associated protein TagF -
  ACAM58_RS01710 (GmRootV116_03420) - 358306..360483 (+) 2178 WP_369663962.1 serine/threonine-protein kinase -
  ACAM58_RS01715 (GmRootV116_03430) comM 360512..362059 (-) 1548 WP_369663963.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAM58_RS01720 (GmRootV116_03440) - 362277..363101 (+) 825 WP_012745382.1 TorF family putative porin -
  ACAM58_RS01725 (GmRootV116_03450) glnK 363172..363510 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  ACAM58_RS01730 (GmRootV116_03460) - 363533..365065 (+) 1533 WP_369663964.1 ammonium transporter -
  ACAM58_RS01735 (GmRootV116_03470) - 365356..366291 (+) 936 WP_369663965.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 515 a.a.        Molecular weight: 53803.50 Da        Isoelectric Point: 7.9027

>NTDB_id=106731 ACAM58_RS01715 WP_369663963.1 360512..362059(-) (comM) [Variovorax sp. V116]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKIVVNLAPADLPKDSGR
FDLPIALGILAASGQIQPALLAGHEFAGELSLSGELRPVRGALAMALALHTRGIATRLVLPAASAQEAALVPGSEVYGAR
HLLDVVQRFMPEGAALPQGEEQQQQPATDGWARVHAAAAAAAPLYADLADVKGHAGAKRALEIAAAGGHSLLMVGEPGSG
KSMLAQRFAGLLPPMSVDEALESAAVASLAGSFSAARWMNRPTSAPHHTSSAVALVGGGSPPRPGEISQAHHGVLFLDEF
PEFARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSTLKACRCTPDQISRYQAKLSGPLLDRIDL
HIEVPAVSAQQLIDAPPGESTASIRARVVAAREFALQRQGGPNQALQAGAIDKHAALDDAARKFVYNAAAKLGWSARSTH
RALKVARTVADLAGAESVGVVHVAEAVQYRRALRN

Nucleotide


Download         Length: 1548 bp        

>NTDB_id=106731 ACAM58_RS01715 WP_369663963.1 360512..362059(-) (comM) [Variovorax sp. V116]
ATGAGCCTGTCTTTGGTGCAAAGCCGCGCTTTGCTTGGGCTGGAAGCGGCCAGTGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTCGTCGGGCTGGCGGAAACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAACGCCGGCCTGGAGTTTCCGAACAACAAGATCGTCGTCAACCTGGCGCCGGCCGACCTGCCCAAGGATTCCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCGGCCAGCGGGCAGATCCAGCCTGCGCTGCTGGCGGGCCATGAATTTGC
CGGCGAGCTCTCCCTTTCAGGCGAACTGCGGCCGGTGCGCGGCGCGCTCGCCATGGCGCTGGCCCTGCACACGCGCGGCA
TCGCGACGCGGCTGGTGCTGCCCGCCGCCAGCGCCCAGGAAGCGGCGCTGGTGCCCGGCAGCGAGGTGTATGGCGCCAGG
CACCTGCTGGACGTGGTGCAGCGCTTCATGCCCGAGGGCGCCGCGCTGCCGCAGGGCGAGGAACAGCAGCAGCAGCCCGC
CACGGACGGCTGGGCCCGCGTGCACGCCGCAGCCGCGGCGGCCGCGCCGCTCTATGCCGACCTGGCCGACGTCAAGGGCC
ACGCCGGCGCCAAACGCGCCCTCGAGATCGCCGCCGCCGGCGGCCATAGTCTGCTGATGGTCGGCGAGCCCGGTTCGGGC
AAGTCGATGCTGGCGCAGCGCTTTGCCGGCCTGCTGCCGCCCATGAGCGTCGACGAGGCGCTGGAGAGCGCGGCCGTGGC
CAGCCTGGCCGGCAGTTTTTCGGCCGCGCGCTGGATGAACCGGCCGACCTCGGCGCCCCACCACACATCGAGCGCCGTGG
CGCTGGTGGGCGGCGGCTCGCCCCCGCGGCCCGGCGAGATCTCGCAGGCGCACCATGGCGTGCTCTTCCTGGACGAATTT
CCGGAGTTCGCCCGCTCGGCCCTCGAGGCGCTGCGCGAGCCGCTGGAGACGGGCACCATCACCATCGCGCGCGCCGCCCG
TCGCGCCGAATTTCCGGCGCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCCTTGCGGCTACCTGGGCTCGACGCTGA
AGGCCTGCCGCTGCACGCCGGACCAGATCTCGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTG
CACATCGAGGTGCCCGCGGTGTCGGCGCAGCAGCTCATCGACGCGCCGCCCGGCGAATCCACGGCCAGCATCCGCGCCCG
CGTGGTGGCCGCGCGCGAGTTCGCGCTGCAGCGCCAGGGCGGCCCCAACCAGGCGCTGCAGGCCGGCGCCATCGACAAGC
ATGCCGCGCTCGACGATGCGGCACGCAAGTTCGTCTACAACGCCGCCGCCAAGCTCGGCTGGTCGGCGCGCAGCACGCAC
CGCGCGCTCAAGGTGGCGCGCACCGTGGCCGACCTGGCGGGCGCCGAATCGGTGGGGGTGGTACATGTGGCGGAGGCGGT
GCAGTACCGCAGGGCGCTGCGGAACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(207-411)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(418-510)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.292

99.612

0.501
  comM Vibrio campbellii strain DS40M4

49.609

99.417

0.493
  comM Glaesserella parasuis strain SC1401

49.222

99.806

0.491
  comM Legionella pneumophila strain ERS1305867

49.031

100

0.491
  comM Legionella pneumophila str. Paris

49.031

100

0.491
  comM Haemophilus influenzae Rd KW20

48.837

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.72

100

0.433

Multiple sequence alignment