Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAM57_RS30610 Genome accession   NZ_AP028659
Coordinates   6473037..6474581 (+) Length   514 a.a.
NCBI ID   WP_369660042.1    Uniprot ID   -
Organism   Variovorax sp. V15     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6468037..6479581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM57_RS30590 (GmRootV15_60800) - 6468927..6469859 (-) 933 WP_369660041.1 SMP-30/gluconolactonase/LRE family protein -
  ACAM57_RS30595 (GmRootV15_60810) - 6470072..6471508 (-) 1437 WP_126022468.1 ammonium transporter -
  ACAM57_RS30600 (GmRootV15_60820) glnK 6471538..6471876 (-) 339 WP_007833403.1 P-II family nitrogen regulator -
  ACAM57_RS30605 (GmRootV15_60830) - 6471944..6472822 (-) 879 WP_126022469.1 TorF family putative porin -
  ACAM57_RS30610 (GmRootV15_60840) comM 6473037..6474581 (+) 1545 WP_369660042.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAM57_RS30615 (GmRootV15_60850) - 6474670..6476733 (-) 2064 WP_369660043.1 serine/threonine protein kinase -
  ACAM57_RS30620 (GmRootV15_60860) tagF 6476852..6477565 (-) 714 WP_126022472.1 type VI secretion system-associated protein TagF -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54578.23 Da        Isoelectric Point: 7.8728

>NTDB_id=106729 ACAM57_RS30610 WP_369660042.1 6473037..6474581(+) (comM) [Variovorax sp. V15]
MGLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLVETEVKEARERVRSALQNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDNAKLAGHEFAGELSLSGELRPVRGALAMALALHTRGVATRLVLPLESAQEAALVPGGEVYGA
RHLLDVVRQFVATDDEASQLPDTTDDGWARIRAAPDTNPPRYADLAEVKGHTGVKRVLEIAAAGGHSLLMVGEPGSGKSM
LAQRFAGLLPSMHIEEALESAAVASLGGRFATERWRVRPTCSPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEF
ARSALEALREPLETGTITIARAARRAEFPARFQLVAAMNPCPCGYLGSSSRPCRCTHEQVSRYQSKLSGPLLDRIDLHIE
VPPVSAQLLLEAPAGESTDSIRERVVAARERAMLRQGHANQSLQGAAIDRHAALDDAARAFMFNAAAKLGWSARSTHRAL
KVARTIADLAGSQAVQVGHLAEAVQYRRALRGAA

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=106729 ACAM57_RS30610 WP_369660042.1 6473037..6474581(+) (comM) [Variovorax sp. V15]
ATGGGACTGTCTTTGGTGCAAAGCCGCGCCTTGCTGGGTCTTGAAGCGGCCAGTGTCACGGTTGAGGTGCATCTGGCGAA
CGGCCTGCCCAGCTTCACGCTGGTCGGCCTGGTCGAGACCGAGGTCAAGGAGGCGCGAGAGCGCGTGCGCTCGGCGCTGC
AGAACGCGGGGCTGGAGTTCCCCAACAACAAGCGCATCACGGTCAACCTCGCGCCGGCCGACCTGCCGAAGGACTCCGGA
CGCTTCGATCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGCCAGATAGACAACGCGAAGCTCGCCGGCCACGAGTT
CGCCGGCGAGCTCTCGCTTTCGGGCGAGTTGCGGCCCGTGCGCGGCGCGCTGGCCATGGCGCTCGCGCTGCACACGCGCG
GCGTCGCGACGCGGCTGGTGCTGCCCCTGGAAAGTGCGCAGGAGGCGGCGCTGGTACCAGGCGGCGAGGTGTACGGCGCC
AGGCATCTGCTGGACGTGGTGCGCCAGTTCGTGGCCACCGATGACGAAGCTTCACAGTTGCCCGACACCACGGACGACGG
CTGGGCGCGCATCCGGGCCGCGCCCGACACGAACCCGCCCCGCTACGCCGATCTTGCGGAAGTGAAGGGACACACGGGCG
TCAAGCGCGTGCTCGAAATCGCCGCGGCGGGCGGCCACAGCCTGCTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATG
CTCGCCCAGCGCTTCGCGGGGCTGCTGCCGTCGATGCACATCGAGGAGGCACTGGAGAGCGCGGCCGTGGCCAGCCTGGG
TGGGCGCTTCGCGACCGAGCGATGGCGGGTGCGGCCGACATGCTCGCCGCACCATACGGCGAGCGCGGTGGCACTGGTCG
GCGGGGGCTCACCGCCACGGCCCGGTGAAATCTCCCGCGCGCACCATGGAGTCCTTTTTCTCGACGAATTTCCCGAGTTC
GCCAGATCCGCCCTCGAAGCGCTGCGCGAGCCGCTGGAGACCGGCACCATCACCATCGCCCGCGCCGCGCGGCGCGCCGA
ATTCCCGGCGCGCTTCCAGCTCGTCGCCGCGATGAACCCATGTCCCTGCGGCTATCTCGGCTCGTCATCCAGGCCCTGTC
GCTGCACGCACGAGCAAGTCTCGCGCTACCAGAGCAAGCTCAGCGGCCCGCTGCTCGACCGGATCGACCTGCACATCGAA
GTGCCTCCGGTGTCCGCGCAGCTGCTGCTCGAAGCGCCCGCGGGCGAATCGACCGACAGCATCCGCGAACGCGTGGTCGC
CGCGCGCGAGCGCGCGATGCTGCGCCAGGGCCATGCCAACCAGTCGCTGCAAGGCGCGGCCATCGACCGTCATGCGGCAC
TCGACGACGCGGCGCGCGCGTTCATGTTCAACGCGGCCGCCAAGCTCGGCTGGTCGGCGCGCAGCACGCACCGGGCGCTG
AAGGTGGCGCGCACGATCGCGGACCTGGCCGGGTCGCAGGCCGTGCAGGTCGGGCACCTGGCGGAGGCGGTGCAGTATCG
AAGGGCGTTGCGAGGAGCCGCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50

100

0.5
  comM Glaesserella parasuis strain SC1401

50

100

0.5
  comM Vibrio cholerae strain A1552

50.196

99.222

0.498
  comM Vibrio campbellii strain DS40M4

49.412

99.222

0.49
  comM Legionella pneumophila str. Paris

48.054

100

0.481
  comM Legionella pneumophila strain ERS1305867

48.054

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.249

99.416

0.43

Multiple sequence alignment