Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACH19Q_RS13935 | Genome accession | NZ_CP172236 |
| Coordinates | 2935848..2936369 (-) | Length | 173 a.a. |
| NCBI ID | WP_087451617.1 | Uniprot ID | - |
| Organism | Ralstonia pseudosolanacearum strain UMN24-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2930848..2941369
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH19Q_RS13920 (ACH19Q_13920) | moaC | 2932556..2933032 (+) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| ACH19Q_RS13925 (ACH19Q_13925) | - | 2933260..2934993 (-) | 1734 | WP_197368865.1 | PglL family O-oligosaccharyltransferase | - |
| ACH19Q_RS13930 (ACH19Q_13930) | pilA | 2935075..2935581 (-) | 507 | WP_011000517.1 | pilin | Machinery gene |
| ACH19Q_RS13935 (ACH19Q_13935) | pilA | 2935848..2936369 (-) | 522 | WP_087451617.1 | pilin | Machinery gene |
| ACH19Q_RS13940 (ACH19Q_13940) | - | 2936563..2937261 (-) | 699 | WP_019717569.1 | TerC family protein | - |
| ACH19Q_RS13945 (ACH19Q_13945) | sucD | 2937411..2938292 (-) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ACH19Q_RS13950 (ACH19Q_13950) | sucC | 2938377..2939543 (-) | 1167 | WP_197368866.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACH19Q_RS13955 (ACH19Q_13955) | - | 2939610..2940236 (-) | 627 | WP_029240215.1 | DUF2889 domain-containing protein | - |
| ACH19Q_RS13960 (ACH19Q_13960) | recX | 2940511..2940990 (-) | 480 | WP_197368867.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17858.57 Da Isoelectric Point: 10.0311
>NTDB_id=1065827 ACH19Q_RS13935 WP_087451617.1 2935848..2936369(-) (pilA) [Ralstonia pseudosolanacearum strain UMN24-1]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFANLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFANLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=1065827 ACH19Q_RS13935 WP_087451617.1 2935848..2936369(-) (pilA) [Ralstonia pseudosolanacearum strain UMN24-1]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTACTGACCCCATACTCCGGCAGTTCGTCAGTATTTGCCAATTTGCAGGCGGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTACTGACCCCATACTCCGGCAGTTCGTCAGTATTTGCCAATTTGCAGGCGGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.979 |
100 |
0.41 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |