Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ACH105_RS02800 Genome accession   NZ_CP172234
Coordinates   593328..595418 (+) Length   696 a.a.
NCBI ID   WP_200627648.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Y11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 588328..600418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH105_RS02780 (ACH105_02780) pilM 590492..591556 (+) 1065 WP_061337879.1 pilus assembly protein PilM Machinery gene
  ACH105_RS02785 (ACH105_02785) - 591556..592128 (+) 573 WP_043218300.1 PilN domain-containing protein -
  ACH105_RS02790 (ACH105_02790) pilO 592125..592748 (+) 624 WP_043218303.1 type 4a pilus biogenesis protein PilO -
  ACH105_RS02795 (ACH105_02795) pilP 592745..593272 (+) 528 WP_213150289.1 type 4a pilus biogenesis lipoprotein PilP -
  ACH105_RS02800 (ACH105_02800) pilQ 593328..595418 (+) 2091 WP_200627648.1 type IV pilus secretin PilQ Machinery gene
  ACH105_RS02805 (ACH105_02805) aroK 595423..595968 (+) 546 WP_061339736.1 shikimate kinase AroK -
  ACH105_RS02810 (ACH105_02810) aroB 595993..597096 (+) 1104 WP_395764355.1 3-dehydroquinate synthase -
  ACH105_RS02815 (ACH105_02815) - 597099..598733 (+) 1635 WP_395764820.1 AAA family ATPase -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 74769.77 Da        Isoelectric Point: 4.7867

>NTDB_id=1065767 ACH105_RS02800 WP_200627648.1 593328..595418(+) (pilQ) [Stutzerimonas balearica strain Y11]
MNSTLSRVGVAMLALLASPALLAANLNKLDVASLPGDRVELKLAFDEPVSKPRGYTLEQPARIALDLPGVSNKLGVKNRE
LGLGNARSVTVVEAQGRTRLIVNLASLVPYATRVEGNELFIVLGENEGAVAPIASAAASPVASRPAPVAAKMVGKAISNI
DFRRGEDGAGNVVITLSDASVGSTIEEQGGKINVKFDKAQLPEALRVRLDVQDFATPVRFVDATSSSGGASVAIEPSGRY
DYLAYQTDNQLTISVKPLSEDEAEKRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVP
WDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRRELIQVNYAKAADIARLFQSVTENGSGA
TEERGSIAVDDRTNSIIAYQTQERLDELRRIVMQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGNLGTGRKWSAWGKNG
NLTVEDAEGGGQELKWPANTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQPKVVTSDKETAKILKGS
EIPYQEASSSGATSTSFKEAALSLEVTPQITPDDRIIMEVKVTKDAPDFGNAVGGVPPISKNEVNAKVLVNDGETIVIGG
VFSNTQSKSVDKVPFLGDLPYLGRLFRRDTVTNEKSELLIFLTPRIMSNQAIAVSH

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=1065767 ACH105_RS02800 WP_200627648.1 593328..595418(+) (pilQ) [Stutzerimonas balearica strain Y11]
ATGAATAGCACCCTCTCTCGTGTGGGCGTCGCCATGCTGGCGCTGCTTGCCTCGCCTGCGCTGTTGGCAGCGAATTTGAA
CAAGCTTGATGTGGCATCGCTGCCGGGGGATCGGGTCGAGCTCAAGCTGGCCTTCGATGAGCCGGTCAGCAAGCCGCGCG
GCTATACGCTAGAGCAGCCGGCCCGCATTGCGCTGGACCTGCCAGGCGTTTCGAACAAGCTTGGTGTGAAGAACCGGGAG
CTGGGCCTTGGCAACGCGCGTAGCGTAACGGTGGTCGAAGCGCAGGGGCGTACCCGTCTGATCGTTAATCTTGCGTCGCT
CGTGCCCTACGCCACTCGCGTCGAAGGTAACGAGCTGTTCATTGTTCTCGGTGAGAACGAGGGGGCGGTTGCCCCAATTG
CGTCCGCGGCTGCGTCCCCGGTAGCGAGCCGGCCTGCGCCGGTCGCCGCCAAGATGGTCGGCAAAGCCATCAGTAATATC
GATTTCCGACGAGGCGAAGACGGAGCAGGCAATGTCGTGATCACCCTGTCCGACGCATCGGTCGGCTCGACCATCGAGGA
GCAGGGCGGAAAGATCAATGTGAAGTTCGACAAGGCACAGCTGCCGGAAGCGCTACGTGTCCGCCTGGATGTGCAGGACT
TTGCCACGCCGGTGCGCTTTGTGGATGCCACCAGCTCATCCGGCGGCGCCAGTGTGGCGATCGAGCCGAGCGGCCGATAT
GACTATCTCGCATACCAGACGGACAACCAGCTGACCATTAGCGTAAAGCCGCTGAGTGAAGACGAGGCCGAGAAGCGCAA
GTCTGAGCGCTTTGCATACAGCGGGGAAAAGCTGTCGCTGAACTTCCAGGATATCGATGTGCGCTCGGTGCTGCAGCTGA
TTGCCGACTTCACCGATCTGAACCTGGTGGCCAGTGACACCGTGCAGGGCAACATTACCCTGCGTCTGCAGAATGTGCCG
TGGGATCAGGCGCTTGACTTGGTGCTCAAGACGAAGGGATTGGATAAGCGCCAGGTAGGTAATGTGCTGCTTGTGGCGCC
TGCGGACGAGATCGCGGCCCGTGAGCGGCAGGAGCTCGAGTCGCAGCGGCAAATCGCCGAGCTGGCGCCGCTGCGGCGCG
AGCTGATTCAGGTCAACTATGCCAAGGCTGCCGACATTGCGCGTCTGTTCCAGTCGGTCACCGAGAATGGCAGCGGGGCA
ACCGAGGAGCGCGGCTCCATCGCCGTCGATGACCGCACCAACAGCATCATCGCCTACCAGACCCAGGAGCGGCTGGACGA
ACTGCGCCGCATCGTCATGCAGCTGGATATCCCGGTTCGCCAGGTGATGATCGAGGCACGGATCGTCGAGGCGAACGTCG
ATTACGACAAGAGTCTTGGGGTGCGCTGGGGCGGAAACCTCGGTACTGGCCGCAAATGGAGCGCCTGGGGTAAGAATGGA
AATCTGACGGTGGAAGACGCGGAGGGTGGTGGCCAGGAACTCAAGTGGCCCGCCAACACGCCATTCGTAGACATGGGGGC
GGTCGGCTCGACGTCCGGCATTGGTCTTGGCTTCGTTACGGACAATGCGATTCTAGACCTTCAGCTTTCTGCCATGGAAA
AGACGGGAAATGGTGAGGTCGTTTCGCAGCCGAAGGTCGTTACCTCGGACAAGGAAACAGCCAAGATCCTGAAGGGCTCC
GAAATTCCCTACCAGGAAGCCAGCTCCAGCGGCGCGACCAGCACCTCGTTTAAAGAGGCCGCATTGTCCTTGGAAGTTAC
GCCTCAGATCACGCCTGACGATCGGATCATCATGGAGGTGAAAGTCACCAAGGACGCGCCTGATTTTGGCAATGCCGTAG
GCGGGGTGCCCCCGATCAGCAAGAACGAGGTCAATGCCAAAGTGCTGGTCAACGACGGCGAGACGATTGTGATCGGTGGC
GTCTTCTCGAATACGCAGAGCAAGTCGGTCGACAAGGTACCGTTCCTGGGGGACTTGCCTTACCTCGGTCGCCTGTTCCG
TCGTGACACTGTAACCAACGAAAAATCGGAACTGCTGATCTTCCTGACTCCGCGTATCATGAGTAACCAAGCGATAGCTG
TGAGTCATTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(301-347)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

Bacterial type II and III secretion system protein (Secretin)

(531-687)

AMIN domain (AMIN)

(38-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.095

100

0.764
  comQ Acinetobacter baylyi ADP1

41.453

100

0.418
  pilQ Acinetobacter baumannii strain A118

39.373

100

0.415
  pilQ Acinetobacter baumannii D1279779

39.373

100

0.415
  pilQ Legionella pneumophila strain ERS1305867

38.596

98.276

0.379
  pilQ Legionella pneumophila strain Lp02

38.304

98.276

0.376

Multiple sequence alignment