Detailed information NTG0106542

Bioinformatically predicted

Overview

• Name: comGD/cglD
• Type: Machinery gene
• Locus tag: AABA16_RS09610
• Genome accession: NZ_AP028610
• Coordinates: 1854248..1854652 (-)
• Length: 134 a.a.
• NCBI ID: WP_000588023.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain Sep5
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1849248..1859652

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA16_RS09570 (TKY124516_18610)	rnpA	1849663..1850034 (-)	372	WP_000739246.1	ribonuclease P protein component	-
AABA16_RS09575	-	1850051..1850182 (-)	132	WP_000768904.1	hypothetical protein	-
AABA16_RS09580 (TKY124516_18620)	-	1850183..1851373 (-)	1191	WP_000167768.1	acetate kinase	-
AABA16_RS09585 (TKY124516_18630)	comYH	1851424..1852377 (-)	954	WP_000345086.1	class I SAM-dependent methyltransferase	Machinery gene
AABA16_RS09590	-	1852438..1853032 (-)	595	Protein_1863	methyltransferase domain-containing protein	-
AABA16_RS09595 (TKY124516_18660)	comGG/cglG	1853135..1853581 (-)	447	WP_001811371.1	competence type IV pilus minor pilin ComGG	Machinery gene
AABA16_RS09600 (TKY124516_18670)	comGF/cglF	1853559..1854020 (-)	462	WP_000250523.1	competence type IV pilus minor pilin ComGF	Machinery gene
AABA16_RS09605 (TKY124516_18680)	comGE/cglE	1853983..1854285 (-)	303	WP_000413380.1	competence type IV pilus minor pilin ComGE	Machinery gene
AABA16_RS09610 (TKY124516_18690)	comGD/cglD	1854248..1854652 (-)	405	WP_000588023.1	competence type IV pilus minor pilin ComGD	Machinery gene
AABA16_RS09615 (TKY124516_18700)	comGC/cglC	1854645..1854971 (-)	327	WP_000738621.1	comG operon protein ComGC	Machinery gene
AABA16_RS09620 (TKY124516_18710)	comGB/cglB	1854973..1855989 (-)	1017	WP_074017570.1	competence type IV pilus assembly protein ComGB	Machinery gene
AABA16_RS09625 (TKY124516_18720)	comGA/cglA/cilD	1855937..1856878 (-)	942	WP_000249568.1	competence type IV pilus ATPase ComGA	Machinery gene
AABA16_RS09630 (TKY124516_18730)	-	1856954..1857319 (-)	366	WP_000286415.1	DUF1033 family protein	-
AABA16_RS09635 (TKY124516_18740)	-	1857470..1858528 (-)	1059	WP_000649468.1	zinc-dependent alcohol dehydrogenase family protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 14638.82 Da
• Isoelectric Point: 10.2164

>NTDB_id=106542 AABA16_RS09610 WP_000588023.1 1854248..1854652(-) (comGD/cglD) [Streptococcus pneumoniae strain Sep5]
MIKAFTMLESLLVLGLVSILALGLSGSVQSTFAAVEEQIFFMEFEELYRETQKRSVASQQKTSLNLDGQTLSNGSQKLTV
PKGIQAPSGQSITFDRAGGNSSLAKVEFQTSKGAIRYQLYLGNGKIKRIKETKN

Nucleotide

• Length: 405 bp

>NTDB_id=106542 AABA16_RS09610 WP_000588023.1 1854248..1854652(-) (comGD/cglD) [Streptococcus pneumoniae strain Sep5]
ATGATTAAGGCCTTTACCATGCTGGAAAGTCTCTTGGTTTTGGGACTTGTGAGTATCCTTGCCTTGGGCTTATCCGGCTC
TGTCCAGTCCACTTTTGCAGCAGTAGAGGAGCAGATTTTCTTTATGGAGTTTGAAGAACTCTATCGGGAAACCCAAAAAC
GCAGTGTAGCCAGTCAGCAAAAGACTAGTCTAAATTTAGATGGGCAGACGCTTAGCAATGGCAGTCAAAAGTTGACAGTT
CCTAAAGGAATTCAGGCACCATCAGGCCAAAGTATTACATTTGACCGAGCTGGGGGCAATTCGTCCCTGGCTAAGGTTGA
ATTTCAGACCAGTAAAGGAGCGATTCGCTATCAATTATATCTAGGAAATGGAAAAATTAAACGCATTAAGGAAACAAAAA
ATTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD/cglD	Streptococcus pneumoniae TIGR4	98.507	100	0.985
comGD/cglD	Streptococcus pneumoniae Rx1	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae D39	97.761	100	0.978
comGD/cglD	Streptococcus pneumoniae R6	97.761	100	0.978
comGD/cglD	Streptococcus mitis SK321	97.015	100	0.97
comGD/cglD	Streptococcus mitis NCTC 12261	97.744	99.254	0.97
comYD	Streptococcus gordonii str. Challis substr. CH1	58.268	94.776	0.552
comYD	Streptococcus mutans UA140	49.219	95.522	0.47
comYD	Streptococcus mutans UA159	49.219	95.522	0.47