Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | EG64_RS02110 | Genome accession | NZ_CP007606 |
| Coordinates | 421120..422295 (-) | Length | 391 a.a. |
| NCBI ID | WP_038417404.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain BM013B | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 416120..427295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EG64_RS02075 (EG64_02155) | - | 416446..416760 (+) | 315 | WP_001265941.1 | hypothetical protein | - |
| EG64_RS02080 (EG64_02160) | - | 416738..417505 (+) | 768 | WP_038417399.1 | RNA polymerase sigma factor FliA | - |
| EG64_RS02085 (EG64_02165) | fliM | 417498..418562 (+) | 1065 | WP_000763562.1 | flagellar motor switch protein FliM | - |
| EG64_RS02090 (EG64_02170) | fliY | 418566..419429 (+) | 864 | WP_038417401.1 | flagellar motor switch protein FliY | - |
| EG64_RS02095 (EG64_02175) | - | 419458..419994 (+) | 537 | WP_038417403.1 | YhcH/YjgK/YiaL family protein | - |
| EG64_RS02100 (EG64_02180) | - | 419991..420488 (+) | 498 | WP_000780285.1 | DUF2147 domain-containing protein | - |
| EG64_RS02105 (EG64_02185) | fur | 420508..420960 (-) | 453 | WP_000824996.1 | ferric iron uptake transcriptional regulator | - |
| EG64_RS02110 (EG64_02190) | rarA | 421120..422295 (-) | 1176 | WP_038417404.1 | replication-associated recombination protein A | Machinery gene |
| EG64_RS02115 (EG64_02195) | - | 422292..422663 (-) | 372 | WP_000332999.1 | heat shock protein transcriptional repressor HspR | - |
| EG64_RS02120 (EG64_02200) | - | 422673..423539 (-) | 867 | WP_038417405.1 | DnaJ family protein | - |
| EG64_RS02125 (EG64_02205) | - | 423707..424957 (+) | 1251 | WP_038417406.1 | hypothetical protein | - |
| EG64_RS02130 (EG64_02210) | - | 425023..425859 (-) | 837 | WP_000556215.1 | 5'-3' exonuclease | - |
| EG64_RS02135 (EG64_02220) | - | 426133..427029 (-) | 897 | WP_000697567.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43866.49 Da Isoelectric Point: 8.3022
>NTDB_id=106510 EG64_RS02110 WP_038417404.1 421120..422295(-) (rarA) [Helicobacter pylori strain BM013B]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDRLCDK
ALALLKKQIEPDARTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDRLCDK
ALALLKKQIEPDARTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFAVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=106510 EG64_RS02110 WP_038417404.1 421120..422295(-) (rarA) [Helicobacter pylori strain BM013B]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCTATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCAATCCGCTCAAGAAGTTTTATTTTTGAATTAATCCCCTTAAACAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAGAACTTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCAGAATTTATCGCCAGAAGATTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCTATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCAATCCGCTCAAGAAGTTTTATTTTTGAATTAATCCCCTTAAACAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAGAACTTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTTACTAGCGCGTTAATCAAATCTTTAAGAGGGAGCGAT
GAAAACGCCTCCATTTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAATCCAGAATTTATCGCCAGAAGATTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTAGCCGCTTCTTGCTTGTTTGCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTATCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTAGAAAAACCCCTAAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
37.864 |
100 |
0.399 |