Detailed information NTG1064424

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PN837_RS07075
• Genome accession: NZ_CP171822
• Coordinates: 1737559..1738656 (-)
• Length: 365 a.a.
• NCBI ID: WP_395377348.1
• Uniprot ID: -
• Organism: Marinicella sp. W31
• Function: type IV pilus retraction (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1732559..1743656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PN837_RS07055 (PN837_007055)	-	1732655..1733833 (+)	1179	WP_395377344.1	PQQ-dependent sugar dehydrogenase	-
PN837_RS07060 (PN837_007060)	-	1733830..1735593 (-)	1764	WP_395377345.1	metallophosphoesterase family protein	-
PN837_RS07065 (PN837_007065)	-	1735583..1736584 (-)	1002	WP_395377346.1	sulfotransferase family 2 domain-containing protein	-
PN837_RS07070 (PN837_007070)	-	1736599..1737513 (+)	915	WP_395377347.1	sulfotransferase family 2 domain-containing protein	-
PN837_RS07075 (PN837_007075)	pilU	1737559..1738656 (-)	1098	WP_395377348.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PN837_RS07080 (PN837_007080)	-	1738697..1739143 (-)	447	WP_395377349.1	TerB family tellurite resistance protein	-
PN837_RS07085 (PN837_007085)	-	1739210..1740532 (+)	1323	WP_395377350.1	transglycosylase SLT domain-containing protein	-
PN837_RS07090 (PN837_007090)	-	1740578..1742323 (+)	1746	WP_395377351.1	ArnT family glycosyltransferase	-
PN837_RS07095 (PN837_007095)	-	1742338..1743396 (-)	1059	WP_395377352.1	DUF2333 family protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 40946.03 Da
• Isoelectric Point: 5.4505

>NTDB_id=1064424 PN837_RS07075 WP_395377348.1 1737559..1738656(-) (pilU) [Marinicella sp. W31]
MDLTHFLKTMREKEASDMFLSTNAPINIKVEGTLMPLSSTGLPPGIIEKIAYSLMDDEQIAAFQREMECNLAVSIKQVGR
FRVNVFRQRGEVGMVIRTIRSEIPKLDELNMPTHLYDLIMEKRGLILVVGGTGSGKSTTMASMIDYRNSNKTGHILTVED
PIEYIHRHKKSIINQREIGIDTHGYAPALKNALREAPDLILIGEVNDAETMEAAVSFAETGHLCMATLHANNSDQAMERV
LNFFPSDMHNNILMNLALNLRAVISQRLVVDKEGKRRPACEVLLNTPQIRELIRKGQINEIKPAMEASLAEGMQSFDHAL
YDMYKQDIISLEEALLHADSKQGLEVRINLTSEEDKGSGYSDDFF

Nucleotide

• Length: 1098 bp

>NTDB_id=1064424 PN837_RS07075 WP_395377348.1 1737559..1738656(-) (pilU) [Marinicella sp. W31]
ATGGATCTAACTCATTTTCTTAAAACCATGCGGGAAAAAGAAGCATCTGACATGTTTCTCAGTACCAATGCTCCGATTAA
CATCAAAGTAGAAGGCACCTTGATGCCGTTGAGTAGTACCGGTTTACCACCCGGTATTATCGAAAAGATTGCCTATTCTT
TGATGGATGACGAACAAATTGCTGCCTTCCAGCGTGAGATGGAATGTAATTTGGCTGTTTCAATCAAACAGGTTGGTCGT
TTCCGTGTGAATGTGTTTCGCCAGCGTGGCGAAGTCGGTATGGTCATCCGAACCATCCGTAGTGAAATTCCCAAGCTGGA
TGAATTAAATATGCCAACGCATTTGTATGATCTGATCATGGAAAAGCGTGGTTTGATTCTTGTGGTGGGCGGAACCGGAT
CGGGTAAATCAACCACCATGGCATCCATGATTGATTACCGCAACAGCAATAAAACCGGTCATATTCTGACGGTTGAAGAT
CCGATTGAATACATCCACAGGCATAAAAAATCCATTATTAACCAGCGTGAGATCGGTATTGATACGCATGGTTATGCGCC
TGCATTGAAAAATGCGCTGCGGGAAGCTCCGGATTTGATTCTGATTGGTGAGGTGAATGACGCCGAGACCATGGAAGCGG
CTGTTTCGTTTGCTGAAACAGGTCACTTATGTATGGCCACCTTGCACGCCAACAACTCAGACCAAGCGATGGAACGTGTG
CTCAACTTCTTCCCAAGTGATATGCATAACAATATCCTCATGAATCTGGCCTTGAACCTGCGTGCGGTTATTTCACAGCG
GTTGGTGGTAGACAAAGAGGGCAAACGTCGCCCAGCTTGTGAAGTGTTGTTGAATACGCCACAAATCAGGGAATTGATCC
GCAAAGGGCAAATCAATGAAATTAAACCTGCAATGGAAGCGTCTCTGGCTGAAGGTATGCAGTCGTTCGATCATGCGCTT
TATGACATGTACAAACAGGACATCATCAGCCTTGAAGAAGCGTTGTTACACGCGGATTCGAAACAGGGCCTGGAAGTGCG
TATTAACCTGACCAGTGAAGAAGACAAGGGTTCTGGCTACAGTGACGATTTTTTCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (12-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Vibrio cholerae strain A1552	49.722	98.63	0.49
pilU	Pseudomonas stutzeri DSM 10701	50	97.534	0.488
pilU	Acinetobacter baylyi ADP1	47.765	98.082	0.468
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.57	94.247	0.392
pilT	Acinetobacter baylyi ADP1	38.663	94.247	0.364
pilT	Pseudomonas aeruginosa PAK	39.82	91.507	0.364