Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DK43_RS00650 Genome accession   NZ_CP007573
Coordinates   129996..130586 (+) Length   196 a.a.
NCBI ID   WP_003027779.1    Uniprot ID   A0ABD7NI16
Organism   Streptococcus anginosus strain SA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 124996..135586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS00635 (DK43_00660) - 125079..126593 (+) 1515 WP_003027783.1 RNA-binding domain-containing protein -
  DK43_RS00640 (DK43_00665) - 126673..127821 (+) 1149 WP_003027782.1 site-specific integrase -
  DK43_RS00645 (DK43_00670) hexB 127916..129862 (+) 1947 WP_037593386.1 DNA mismatch repair endonuclease MutL Machinery gene
  DK43_RS00650 (DK43_00675) ruvA 129996..130586 (+) 591 WP_003027779.1 Holliday junction branch migration protein RuvA Machinery gene
  DK43_RS00655 (DK43_00680) - 130596..131150 (+) 555 WP_003027778.1 DNA-3-methyladenine glycosylase I -
  DK43_RS00660 (DK43_00685) - 131155..131813 (+) 659 Protein_130 lysostaphin resistance A-like protein -
  DK43_RS00665 (DK43_00690) - 131864..132274 (-) 411 WP_003027775.1 helix-turn-helix transcriptional regulator -
  DK43_RS00670 (DK43_00700) cinA 132544..133812 (+) 1269 WP_022525214.1 competence/damage-inducible protein A Machinery gene
  DK43_RS00675 (DK43_00705) recA 133860..135005 (+) 1146 WP_003027772.1 recombinase RecA -
  DK43_RS00680 (DK43_00710) spx 135092..135490 (+) 399 WP_003027770.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21568.05 Da        Isoelectric Point: 6.4894

>NTDB_id=106090 DK43_RS00650 WP_003027779.1 129996..130586(+) (ruvA) [Streptococcus anginosus strain SA1]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQELQVFVHQVVREDAQLLYGFRTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGVAPKQVAVAATSDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=106090 DK43_RS00650 WP_003027779.1 129996..130586(+) (ruvA) [Streptococcus anginosus strain SA1]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGCTTCAAGTTTTTGTTCATCAGGTGGTCAGAG
AGGATGCTCAGCTCCTCTACGGTTTTCGCACAGAGGATGAAAAGCAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGCCCCGTTTCTGCTCTTGCGATAATCGCAGCTGATGATAATGCTGGATTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTATCTGACCAAGTTTCCCAAGATAGGCAAAAAGACAGCCCAGCAGATGGTGCTGGACTTAGAAGGAAAGGTTGTGGCAA
CAGGTGTTGCTCCTAAGCAAGTTGCTGTTGCAGCTACTAGTGACAATCAAGAATTGGAAGAAGCCATGGAAGCCATGTTG
GCTTTGGGCTACAAGGCTGCTGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGCACAACAGACACTGCTGAAAACTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7NI16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

85.787

100

0.862
  ruvA Streptococcus pneumoniae D39

85.787

100

0.862
  ruvA Streptococcus pneumoniae TIGR4

85.787

100

0.862
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.488

100

0.423

Multiple sequence alignment