Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACF3N8_RS07865 Genome accession   NZ_CP171119
Coordinates   1614738..1615073 (+) Length   111 a.a.
NCBI ID   WP_238100785.1    Uniprot ID   -
Organism   Staphylococcus massiliensis strain WGS1515     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1609738..1620073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3N8_RS07835 (ACF3N8_07835) - 1610517..1610723 (+) 207 WP_009382542.1 YqgQ family protein -
  ACF3N8_RS07840 (ACF3N8_07840) - 1610720..1611703 (+) 984 WP_009382541.1 ROK family glucokinase -
  ACF3N8_RS07845 (ACF3N8_07845) - 1611706..1612026 (+) 321 WP_238102074.1 MTH1187 family thiamine-binding protein -
  ACF3N8_RS07850 (ACF3N8_07850) - 1612026..1612649 (+) 624 WP_009382539.1 MBL fold metallo-hydrolase -
  ACF3N8_RS07855 (ACF3N8_07855) comGA 1612705..1613676 (+) 972 WP_238100787.1 competence type IV pilus ATPase ComGA Machinery gene
  ACF3N8_RS07860 (ACF3N8_07860) comGB 1613648..1614721 (+) 1074 WP_017176497.1 competence type IV pilus assembly protein ComGB -
  ACF3N8_RS07865 (ACF3N8_07865) comGC 1614738..1615073 (+) 336 WP_238100785.1 competence type IV pilus major pilin ComGC Machinery gene
  ACF3N8_RS07870 (ACF3N8_07870) comGD 1615048..1615491 (+) 444 WP_392449807.1 competence type IV pilus minor pilin ComGD -
  ACF3N8_RS07875 (ACF3N8_07875) comGE 1615478..1615762 (+) 285 WP_009382533.1 competence type IV pilus minor pilin ComGE -
  ACF3N8_RS07880 (ACF3N8_07880) comGF 1615740..1616171 (+) 432 WP_009382531.1 competence type IV pilus minor pilin ComGF -
  ACF3N8_RS07885 (ACF3N8_07885) - 1616149..1616358 (+) 210 WP_009382530.1 hypothetical protein -
  ACF3N8_RS07890 (ACF3N8_07890) - 1616345..1616863 (+) 519 WP_009382529.1 shikimate kinase -
  ACF3N8_RS07895 (ACF3N8_07895) gcvT 1617020..1618111 (+) 1092 WP_009382528.1 glycine cleavage system aminomethyltransferase GcvT -
  ACF3N8_RS07900 (ACF3N8_07900) gcvPA 1618124..1619473 (+) 1350 WP_009382527.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12463.56 Da        Isoelectric Point: 10.0678

>NTDB_id=1060237 ACF3N8_RS07865 WP_238100785.1 1614738..1615073(+) (comGC) [Staphylococcus massiliensis strain WGS1515]
MNQKLQQLKQTFRNNKAFTLLEMLVVLLVVSLLLILILPNIAKQTEHIQATGCEAQTKMVNSQIESYTLKHNQKPTSIDQ
LVNDGFLRENQKTCKNGATISIVNGEAVARK

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1060237 ACF3N8_RS07865 WP_238100785.1 1614738..1615073(+) (comGC) [Staphylococcus massiliensis strain WGS1515]
ATGAATCAAAAATTACAACAATTGAAACAAACTTTCCGAAATAATAAAGCTTTTACCTTGCTCGAAATGTTAGTCGTTTT
GTTAGTGGTATCTCTACTTTTAATATTGATATTACCGAACATCGCGAAACAAACTGAACATATTCAAGCTACTGGATGTG
AAGCACAAACTAAAATGGTAAATAGCCAAATTGAGTCTTACACGCTTAAGCATAATCAAAAACCTACTTCGATTGATCAG
CTTGTTAATGATGGCTTTTTAAGAGAGAATCAAAAAACATGTAAAAATGGTGCAACGATTTCAATTGTGAATGGTGAAGC
GGTTGCGCGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

70.103

87.387

0.613
  comGC Staphylococcus aureus MW2

70.103

87.387

0.613
  comGC/cglC Streptococcus mitis SK321

44.211

85.586

0.378
  comGC/cglC Streptococcus pneumoniae R6

43.158

85.586

0.369
  comGC/cglC Streptococcus pneumoniae Rx1

43.158

85.586

0.369
  comGC/cglC Streptococcus pneumoniae TIGR4

43.158

85.586

0.369
  comGC/cglC Streptococcus pneumoniae D39

43.158

85.586

0.369

Multiple sequence alignment