Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACFKHK_RS08700 Genome accession   NZ_CP170760
Coordinates   1653279..1655246 (-) Length   655 a.a.
NCBI ID   WP_392461871.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1648279..1660246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS08680 amiF 1648770..1649693 (-) 924 WP_174845629.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHK_RS08685 amiE 1649703..1650767 (-) 1065 WP_312251543.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS08690 amiD 1650777..1651703 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHK_RS08695 amiC 1651703..1653202 (-) 1500 WP_392461870.1 ABC transporter permease Regulator
  ACFKHK_RS08700 amiA 1653279..1655246 (-) 1968 WP_392461871.1 peptide ABC transporter substrate-binding protein Regulator
  ACFKHK_RS08705 pbp3 1655463..1656704 (+) 1242 WP_392461873.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  ACFKHK_RS08710 sufB 1656907..1658322 (-) 1416 WP_392461875.1 Fe-S cluster assembly protein SufB -
  ACFKHK_RS08715 sufU 1658503..1658943 (-) 441 WP_174845635.1 Fe-S cluster assembly sulfur transfer protein SufU -
  ACFKHK_RS08720 - 1658930..1660156 (-) 1227 WP_392461877.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72767.59 Da        Isoelectric Point: 4.3004

>NTDB_id=1059279 ACFKHK_RS08700 WP_392461871.1 1653279..1655246(-) (amiA) [Streptococcus parasuis strain FZ2]
MKRNKLFALAGITLLSASFLVACGSNSNSNSETSTTYSYVYTEDPTSLDYITFNRAQVSDIVTNMVDGLLENDKYGNLIP
SLAEDWKVSKDGLTYTYTLREGVKWYTAEGEEYADVTANDFVTAIKHAVDTQSEGLYIIQDSIAGLDDYVNGKTSDFETV
GVKALDDRTVQYTLSHPEPYWNSKLTMSIMLPVNAEFLESKGEDFGKVEPGGILYNGAYFISAMTSKSSLEYTKNENYWD
ADNVKIENVKLTYYDGQDPESLVRGFTDGIYSNARVYPNSSSYSSVKEQYAENITYSLQDATVYFTTLNLNRSNYGHTAK
TTDVQKESARKALLNKDFRQAITFSFNRQDYLAQSVGEDAADKPLRNLMVPPTFVSAGKKSFGDLVSEKVISYGDEWADV
DFSDAQNGLYNVDKAKVEFEKAKQTLSAEGVEFPIHLDMPVNQSSEVSTQQAASLKQSVEAALGTENIVIDLQMMDTDTF
TNAAFYTETPDQNDYDITYSGWGPDYQDPSTYLDILETTSGAMTSKLGIDSSTTDVIKTVGLDKYDALLKEASDEKLDVV
KRYEKYAEAQAWLTDSAIVIPYMSLGGTPSVSKVIPYTASVSDIGIKGGVSFYKYREVGTEVNKAEDVYAKREKWLKEKA
ESNAKAQEKLANHVE

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1059279 ACFKHK_RS08700 WP_392461871.1 1653279..1655246(-) (amiA) [Streptococcus parasuis strain FZ2]
ATGAAACGAAATAAATTGTTTGCATTAGCAGGAATTACTCTGCTGTCAGCCTCGTTCTTGGTTGCATGTGGTTCCAATTC
TAACTCAAATTCTGAAACTAGTACAACTTATTCGTATGTTTATACTGAAGATCCAACTTCTTTAGATTATATTACTTTTA
ACCGTGCGCAAGTTTCTGATATTGTTACTAATATGGTGGATGGTTTGTTAGAGAATGACAAGTACGGTAACTTAATCCCC
TCTCTTGCTGAAGATTGGAAGGTTTCAAAAGATGGTTTAACATATACTTATACTCTTCGTGAGGGTGTAAAATGGTATAC
AGCTGAAGGTGAAGAATATGCTGACGTGACAGCAAATGACTTTGTAACAGCTATTAAACATGCTGTGGATACACAGTCTG
AAGGTTTATATATTATCCAAGATTCAATTGCTGGTTTAGATGACTATGTTAACGGTAAAACAAGTGACTTTGAAACTGTT
GGTGTTAAGGCTTTAGATGACCGTACTGTTCAGTATACTTTGAGCCATCCAGAACCATATTGGAACTCAAAGTTAACCAT
GTCAATCATGTTGCCTGTAAATGCGGAATTCTTAGAATCAAAAGGTGAAGACTTTGGTAAAGTAGAGCCAGGTGGAATTC
TTTACAATGGTGCATACTTTATTAGTGCAATGACATCTAAATCTTCACTTGAATATACAAAGAATGAAAACTACTGGGAT
GCCGACAATGTTAAAATTGAGAATGTTAAGTTAACATATTATGATGGGCAAGATCCAGAATCTTTGGTAAGGGGCTTCAC
GGATGGAATCTATTCTAATGCTCGAGTATATCCAAATTCGTCTAGCTATTCATCTGTTAAAGAACAATATGCTGAGAACA
TCACTTATAGCCTTCAAGATGCAACAGTATATTTCACTACTTTGAACTTAAATCGTTCAAACTATGGTCATACTGCAAAA
ACAACAGATGTTCAGAAAGAATCAGCTAGAAAAGCATTATTAAATAAAGATTTTCGTCAAGCCATAACTTTCTCATTTAA
CCGCCAAGATTACTTAGCACAATCAGTTGGTGAGGACGCTGCAGATAAGCCATTACGCAACTTGATGGTTCCTCCTACTT
TTGTAAGTGCAGGCAAAAAATCATTTGGTGATTTAGTAAGTGAAAAAGTAATCTCATACGGAGATGAGTGGGCAGATGTA
GATTTCTCTGATGCTCAAAATGGGCTTTACAACGTTGATAAGGCAAAAGTTGAATTTGAAAAAGCAAAACAAACACTTTC
TGCTGAAGGAGTTGAATTCCCTATTCACTTAGATATGCCAGTTAACCAAAGTAGTGAGGTTAGTACACAACAAGCTGCTT
CTTTGAAACAGTCTGTTGAAGCAGCATTGGGCACTGAAAATATTGTAATTGATCTTCAGATGATGGATACAGATACGTTT
ACAAACGCAGCTTTCTACACTGAAACACCGGATCAAAATGATTATGACATTACATACAGTGGATGGGGTCCTGACTACCA
AGATCCGTCTACCTACCTTGATATATTAGAAACAACATCTGGTGCGATGACTAGCAAGTTGGGTATTGATTCAAGCACGA
CTGATGTGATTAAAACAGTTGGGCTAGACAAATACGACGCGCTTCTTAAAGAAGCTTCTGATGAAAAACTTGATGTTGTA
AAACGATATGAAAAATATGCCGAAGCTCAAGCTTGGTTAACTGATAGCGCGATTGTAATCCCGTATATGTCATTAGGCGG
TACTCCTAGTGTATCTAAGGTTATTCCTTACACAGCATCTGTGTCTGATATTGGTATCAAAGGCGGTGTCTCATTCTACA
AATATAGGGAAGTGGGCACTGAAGTAAACAAGGCAGAAGATGTTTACGCTAAGCGTGAAAAATGGTTAAAAGAAAAAGCT
GAGTCAAATGCTAAAGCGCAAGAAAAACTTGCTAACCATGTAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.242

100

0.547
  amiA3 Streptococcus thermophilus LMD-9

53.636

100

0.54
  amiA3 Streptococcus thermophilus LMG 18311

53.485

100

0.539

Multiple sequence alignment