Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACFKHK_RS08680 Genome accession   NZ_CP170760
Coordinates   1648770..1649693 (-) Length   307 a.a.
NCBI ID   WP_174845629.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643770..1654693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS08665 mvk 1644505..1645440 (-) 936 WP_392461864.1 mevalonate kinase -
  ACFKHK_RS08670 - 1645701..1646969 (-) 1269 WP_392461866.1 MATE family efflux transporter -
  ACFKHK_RS08675 thrC 1647073..1648557 (-) 1485 WP_392461868.1 threonine synthase -
  ACFKHK_RS08680 amiF 1648770..1649693 (-) 924 WP_174845629.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHK_RS08685 amiE 1649703..1650767 (-) 1065 WP_312251543.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS08690 amiD 1650777..1651703 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHK_RS08695 amiC 1651703..1653202 (-) 1500 WP_392461870.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34618.78 Da        Isoelectric Point: 6.4233

>NTDB_id=1059275 ACFKHK_RS08680 WP_174845629.1 1648770..1649693(-) (amiF) [Streptococcus parasuis strain FZ2]
MTEKLVEIKDLEISFGEGRKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSGGDILYNGEKINGKISHE
KSRELIKKIQMIFQDPAASLNERATVDYIISEGLYNFKLFNNEEERQAKVRSMMTEVGLLAEHLTRFPHEFSGGQRQRIG
IARALVMNPELVIADEPISALDVSVRAQVLNLLKRLQEELGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFK
NPLHPYTRSLLSAVPIPDPILERQKTLVVYDPNIHDYSIDKPEMHEIKPGHFVWSNKAEFAKYSEGI

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1059275 ACFKHK_RS08680 WP_174845629.1 1648770..1649693(-) (amiF) [Streptococcus parasuis strain FZ2]
ATGACTGAAAAATTAGTTGAAATCAAAGATTTAGAAATTTCTTTCGGTGAAGGGCGCAAAAAATTTGTAGCTGTCAAAAA
TGCTAATTTCTTTATTAATCGTGGAGAAACATTCTCCTTAGTTGGAGAATCTGGGTCTGGTAAGACAACGATTGGTCGTG
CGATAATTGGACTAAATGAAACAAGTGGTGGAGATATTCTTTATAATGGAGAGAAAATAAATGGGAAAATTTCTCATGAG
AAGTCTCGAGAATTAATTAAGAAAATTCAAATGATTTTTCAAGATCCAGCTGCGAGTTTGAATGAACGTGCAACAGTAGA
CTATATTATCTCTGAGGGCTTGTACAATTTTAAATTGTTTAATAATGAAGAAGAGCGGCAAGCAAAAGTTCGGTCAATGA
TGACAGAAGTGGGGCTACTTGCGGAACACTTAACACGTTTTCCTCATGAGTTCTCAGGAGGCCAACGCCAGAGGATAGGT
ATAGCTCGAGCACTTGTGATGAATCCTGAATTGGTGATTGCCGATGAACCGATTTCTGCATTAGATGTGTCTGTTAGAGC
TCAAGTCTTAAATTTATTGAAGAGATTGCAAGAAGAGCTGGGCTTAACTTATCTCTTTATTGCACATGATTTGTCGGTTG
TTCGGTTTATTTCTGATAGGATTGCAGTGATTCATAAAGGTGTTATTGTAGAAGTGGCAGAGACAGAGGAATTGTTTAAG
AATCCTTTGCATCCATACACTCGTTCCTTACTATCTGCTGTTCCTATTCCGGATCCAATTTTAGAAAGACAAAAAACTTT
AGTAGTATATGATCCAAATATACATGATTATTCTATAGATAAGCCAGAAATGCATGAAATCAAGCCAGGCCATTTTGTAT
GGTCAAATAAAGCAGAATTTGCAAAATATTCAGAAGGCATATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

80.198

98.697

0.792
  amiF Streptococcus thermophilus LMD-9

79.868

98.697

0.788
  amiF Streptococcus salivarius strain HSISS4

79.538

98.697

0.785

Multiple sequence alignment