Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACFKHK_RS08690 Genome accession   NZ_CP170760
Coordinates   1650777..1651703 (-) Length   308 a.a.
NCBI ID   WP_171989130.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1645777..1656703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS08675 thrC 1647073..1648557 (-) 1485 WP_392461868.1 threonine synthase -
  ACFKHK_RS08680 amiF 1648770..1649693 (-) 924 WP_174845629.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHK_RS08685 amiE 1649703..1650767 (-) 1065 WP_312251543.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS08690 amiD 1650777..1651703 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHK_RS08695 amiC 1651703..1653202 (-) 1500 WP_392461870.1 ABC transporter permease Regulator
  ACFKHK_RS08700 amiA 1653279..1655246 (-) 1968 WP_392461871.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34617.53 Da        Isoelectric Point: 9.4261

>NTDB_id=1059277 ACFKHK_RS08690 WP_171989130.1 1650777..1651703(-) (amiD) [Streptococcus parasuis strain FZ2]
MSTIDKSKFQFVKRDDFASEVIDTPAYSYWNSVFRQFLKKKSTIVMLIILVAIVLMSFIYPIFANYDFNDVSKINDFSAR
YNWPNAEYWFGTDANGQSLFDGVWYGARNSILIALIATVINLVVGVILGGIWGVSKTFDKIMMEIYNVISNIPSLMIFIV
MSYALGAGFWNLILAFCLTGWIGVAFSIRIQIMRYRDLEYNLASRTLGTPTFKLVVKNLLPQLVSVIVTQASQSLPSYIS
VEAFLSYFGIGLPVTTPSLGRLLSKYAQNVTTNAYLFWIPLAALILVSLSLFIVGQNLSDASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1059277 ACFKHK_RS08690 WP_171989130.1 1650777..1651703(-) (amiD) [Streptococcus parasuis strain FZ2]
ATGTCAACAATTGATAAAAGTAAATTTCAATTTGTAAAACGTGATGATTTTGCTTCGGAGGTAATTGATACTCCTGCCTA
CTCATATTGGAATTCTGTATTTCGACAGTTTCTAAAGAAAAAATCAACCATTGTAATGTTAATTATTTTGGTAGCCATCG
TCCTTATGAGTTTTATTTATCCCATTTTTGCAAATTATGATTTCAATGATGTAAGTAAAATTAATGATTTCAGCGCTCGT
TATAATTGGCCAAATGCCGAGTATTGGTTCGGAACTGATGCAAATGGACAGTCTCTATTTGATGGGGTTTGGTATGGAGC
AAGAAATTCAATTTTGATTGCACTTATTGCGACTGTTATTAACCTTGTCGTTGGTGTCATCCTTGGGGGAATCTGGGGTG
TATCAAAGACTTTTGATAAAATAATGATGGAAATTTACAATGTCATATCAAATATTCCATCACTAATGATTTTCATTGTA
ATGTCATATGCTCTTGGAGCTGGCTTCTGGAATTTGATATTAGCATTTTGTTTAACAGGATGGATTGGTGTAGCGTTTTC
AATCCGAATCCAGATTATGAGATATCGCGATTTGGAATATAATTTGGCTAGTCGCACGCTCGGTACTCCAACTTTTAAAT
TAGTAGTAAAAAACCTATTGCCACAATTGGTATCTGTGATAGTAACACAAGCCTCACAAAGTTTACCAAGCTATATTTCA
GTGGAGGCCTTCCTTTCATACTTTGGAATAGGGCTCCCTGTGACAACACCAAGTTTAGGTCGATTGCTTTCTAAATATGC
TCAAAATGTGACTACCAATGCATACTTGTTTTGGATTCCTTTAGCAGCGTTAATCTTAGTTTCGCTATCACTCTTCATTG
TTGGACAAAATTTGTCTGATGCAAGTGACCCACGTACACATAGATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

77.922

100

0.779
  amiD Streptococcus thermophilus LMG 18311

76.299

100

0.763
  amiD Streptococcus thermophilus LMD-9

76.299

100

0.763

Multiple sequence alignment