Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ACFKHK_RS08685 Genome accession   NZ_CP170760
Coordinates   1649703..1650767 (-) Length   354 a.a.
NCBI ID   WP_312251543.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644703..1655767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS08670 - 1645701..1646969 (-) 1269 WP_392461866.1 MATE family efflux transporter -
  ACFKHK_RS08675 thrC 1647073..1648557 (-) 1485 WP_392461868.1 threonine synthase -
  ACFKHK_RS08680 amiF 1648770..1649693 (-) 924 WP_174845629.1 ATP-binding cassette domain-containing protein Regulator
  ACFKHK_RS08685 amiE 1649703..1650767 (-) 1065 WP_312251543.1 ABC transporter ATP-binding protein Regulator
  ACFKHK_RS08690 amiD 1650777..1651703 (-) 927 WP_171989130.1 oligopeptide ABC transporter permease OppC Regulator
  ACFKHK_RS08695 amiC 1651703..1653202 (-) 1500 WP_392461870.1 ABC transporter permease Regulator
  ACFKHK_RS08700 amiA 1653279..1655246 (-) 1968 WP_392461871.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 39404.29 Da        Isoelectric Point: 4.8874

>NTDB_id=1059276 ACFKHK_RS08685 WP_312251543.1 1649703..1650767(-) (amiE) [Streptococcus parasuis strain FZ2]
MAEKNNVILSAKDVVVEFEVRDRVLTAIRSVSIDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRIASGSIIYRGEEL
TDIKKHEDWEKIRGAKIATIFQDPMTSLNPLVTIGRQITEVIIKHQGKSISEAKELAVNYMERVGIPDAKKRFNEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQILDLLKELQKEYNFTTIFITHDLGVVASIADKVAVMYAGEVIE
FGTVEDIFYDPRHPYTWSLLSSLPQLANSNGELFSIPGTPPSLFTPVLGDAFAPRSEFAMQVDFEESPPIFQVTENHWAK
TWLLHPEAPKAAKPEVIQDLHSKIKSKMSVEDIK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1059276 ACFKHK_RS08685 WP_312251543.1 1649703..1650767(-) (amiE) [Streptococcus parasuis strain FZ2]
ATGGCAGAAAAGAACAATGTAATATTATCCGCAAAAGATGTGGTCGTGGAATTTGAAGTTCGTGACCGTGTTTTGACGGC
TATACGTAGTGTCTCTATTGATTTAATCGAGGGAGAGGTTCTCGCAATTGTAGGGGAGTCTGGTTCTGGAAAGTCAGTTT
TGACAAAAACTTTCACAGGGATGCTGGAAGAGAATGGTCGAATTGCTTCAGGAAGTATTATTTATCGTGGAGAAGAATTA
ACTGATATAAAAAAACATGAAGACTGGGAAAAAATACGTGGTGCAAAAATTGCAACTATTTTCCAGGATCCAATGACAAG
TCTTAATCCTTTGGTTACAATTGGCCGCCAAATTACCGAAGTTATCATTAAACATCAAGGAAAATCAATTTCTGAGGCAA
AAGAACTTGCGGTTAATTATATGGAACGAGTGGGTATTCCAGATGCAAAAAAACGTTTCAATGAATACCCGTTTCAATAT
TCAGGTGGTATGCGACAAAGAATTGTCATTGCAATTGCCTTAGCATGCCGTCCAGATGTATTAATTTGTGATGAACCAAC
AACAGCATTAGATGTAACAATACAAGCTCAAATTTTAGACTTATTAAAAGAATTACAAAAAGAATACAATTTTACAACAA
TTTTCATCACGCATGATTTGGGTGTTGTTGCAAGCATCGCTGACAAAGTTGCTGTTATGTATGCTGGCGAAGTTATTGAA
TTTGGAACCGTAGAAGACATCTTTTATGACCCTCGACATCCATATACATGGAGTCTACTTTCAAGTCTTCCTCAGTTAGC
CAATTCTAATGGAGAACTCTTTTCAATTCCAGGAACACCTCCTTCACTTTTCACTCCGGTCTTAGGAGATGCATTTGCAC
CTCGTTCTGAATTCGCGATGCAGGTTGATTTTGAAGAATCTCCACCTATTTTTCAAGTTACAGAAAATCATTGGGCTAAA
ACTTGGTTATTACACCCTGAAGCTCCTAAAGCGGCCAAACCAGAAGTGATTCAGGATTTACATTCAAAAATTAAATCTAA
GATGTCAGTGGAAGATATTAAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

78.797

98.588

0.777
  amiE Streptococcus thermophilus LMG 18311

78.51

98.588

0.774
  amiE Streptococcus thermophilus LMD-9

78.51

98.588

0.774
  oppD Streptococcus mutans UA159

56.342

95.763

0.54

Multiple sequence alignment