Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   ACFKHJ_RS03380 Genome accession   NZ_CP170759
Coordinates   643149..643853 (+) Length   234 a.a.
NCBI ID   WP_171988528.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 638149..648853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS03360 - 639961..640620 (-) 660 WP_171988525.1 amino acid ABC transporter permease -
  ACFKHJ_RS03365 - 640635..641333 (-) 699 WP_392452945.1 amino acid ABC transporter permease -
  ACFKHJ_RS03370 - 641348..642187 (-) 840 WP_274505714.1 transporter substrate-binding domain-containing protein -
  ACFKHJ_RS03375 - 642197..642958 (-) 762 WP_277940257.1 amino acid ABC transporter ATP-binding protein -
  ACFKHJ_RS03380 micA 643149..643853 (+) 705 WP_171988528.1 response regulator YycF Regulator
  ACFKHJ_RS03385 micB 643846..645195 (+) 1350 WP_277745602.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACFKHJ_RS03390 vicX 645202..646005 (+) 804 WP_171988530.1 MBL fold metallo-hydrolase Regulator
  ACFKHJ_RS03395 pbp2b 646326..648356 (+) 2031 WP_216658259.1 penicillin-binding protein PBP2B -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26787.73 Da        Isoelectric Point: 4.7428

>NTDB_id=1059203 ACFKHJ_RS03380 WP_171988528.1 643149..643853(+) (micA) [Streptococcus parasuis strain FZ1]
MKKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALDIFEAEFPDIVILDLMLPEIDGLEVARTIRKTSNVPILMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSELAETQEAVESSGTPELVIGDLVIVPDAFVAKKHGKELELT
HREFELLYHLAKHTGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYFIKAYD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1059203 ACFKHJ_RS03380 WP_171988528.1 643149..643853(+) (micA) [Streptococcus parasuis strain FZ1]
ATGAAGAAAATTTTAATTGTTGATGATGAGAAACCAATCTCGGATATTATTAAGTTCAATATGACACGTGAAGGATATGA
GGTAGTTACTGCGTTTGATGGACGTGAGGCGCTTGATATTTTTGAAGCAGAGTTTCCAGACATTGTTATTTTAGATTTAA
TGCTTCCAGAAATAGATGGATTAGAAGTAGCACGGACGATTCGAAAAACAAGTAATGTTCCTATTTTAATGTTGTCAGCT
AAAGATAGTGAGTTTGATAAAGTTATTGGGCTTGAAATTGGTGCGGATGACTATGTGACAAAGCCATTCTCAAACCGTGA
ATTACAGGCGCGTGTAAAAGCTCTTCTTCGTCGAAGTGAATTGGCTGAGACGCAAGAAGCAGTTGAATCATCTGGTACTC
CAGAATTGGTAATCGGTGATTTGGTAATTGTTCCAGATGCTTTTGTAGCTAAGAAACATGGAAAAGAACTTGAACTAACA
CACCGTGAATTTGAATTATTGTATCATTTGGCCAAGCACACTGGGCAAGTCATGACGCGAGAGCATCTACTTGAGACTGT
TTGGGGATATGATTATTTTGGAGATGTACGTACTGTGGACGTGACGGTTCGACGCTTGCGCGAAAAAATTGAAGACACTC
CAAGTCGTCCGGAATACATCTTGACACGCAGGGGAGTAGGTTATTTTATAAAAGCTTATGATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

84.416

98.718

0.833
  vicR Streptococcus mutans UA159

81.277

100

0.816
  covR Streptococcus salivarius strain HSISS4

43.29

98.718

0.427
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

36.709

100

0.372

Multiple sequence alignment