Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ACFKHJ_RS03390 Genome accession   NZ_CP170759
Coordinates   645202..646005 (+) Length   267 a.a.
NCBI ID   WP_171988530.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 640202..651005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS03365 - 640635..641333 (-) 699 WP_392452945.1 amino acid ABC transporter permease -
  ACFKHJ_RS03370 - 641348..642187 (-) 840 WP_274505714.1 transporter substrate-binding domain-containing protein -
  ACFKHJ_RS03375 - 642197..642958 (-) 762 WP_277940257.1 amino acid ABC transporter ATP-binding protein -
  ACFKHJ_RS03380 micA 643149..643853 (+) 705 WP_171988528.1 response regulator YycF Regulator
  ACFKHJ_RS03385 micB 643846..645195 (+) 1350 WP_277745602.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ACFKHJ_RS03390 vicX 645202..646005 (+) 804 WP_171988530.1 MBL fold metallo-hydrolase Regulator
  ACFKHJ_RS03395 pbp2b 646326..648356 (+) 2031 WP_216658259.1 penicillin-binding protein PBP2B -
  ACFKHJ_RS03400 recR 648365..648961 (+) 597 WP_002935848.1 recombination mediator RecR -
  ACFKHJ_RS03405 - 649070..650116 (+) 1047 WP_392452950.1 D-alanine--D-alanine ligase -
  ACFKHJ_RS03410 - 650229..650609 (+) 381 WP_171988533.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29624.57 Da        Isoelectric Point: 5.3289

>NTDB_id=1059205 ACFKHJ_RS03390 WP_171988530.1 645202..646005(+) (vicX) [Streptococcus parasuis strain FZ1]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTNKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1059205 ACFKHJ_RS03390 WP_171988530.1 645202..646005(+) (vicX) [Streptococcus parasuis strain FZ1]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTTTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCATATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAATAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment