Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFJI2_RS00165 Genome accession   NZ_CP170549
Coordinates   44069..45595 (-) Length   508 a.a.
NCBI ID   WP_377703242.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_71     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 39069..50595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJI2_RS00155 (ACFJI2_00155) - 43064..43411 (-) 348 WP_028833891.1 DUF1840 domain-containing protein -
  ACFJI2_RS00160 (ACFJI2_00160) - 43473..44027 (-) 555 WP_377703241.1 hypothetical protein -
  ACFJI2_RS00165 (ACFJI2_00165) comM 44069..45595 (-) 1527 WP_377703242.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFJI2_RS00170 (ACFJI2_00170) - 45676..45921 (-) 246 WP_028833888.1 accessory factor UbiK family protein -
  ACFJI2_RS00175 (ACFJI2_00175) - 46163..46921 (+) 759 WP_107878153.1 TorF family putative porin -
  ACFJI2_RS00180 (ACFJI2_00180) - 46933..47271 (+) 339 WP_107878151.1 P-II family nitrogen regulator -
  ACFJI2_RS00185 (ACFJI2_00185) - 47291..48823 (+) 1533 WP_377703243.1 ammonium transporter -
  ACFJI2_RS00190 (ACFJI2_00190) gshA 48975..50276 (+) 1302 WP_107878147.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54560.51 Da        Isoelectric Point: 7.7352

>NTDB_id=1057905 ACFJI2_RS00165 WP_377703242.1 44069..45595(-) (comM) [Pseudoduganella sp. UC29_71]
MSLAVLRSRALAGMEAPEVSVEVHLANGLPAFAMVGLPETEVKEARDRVRAAIHNAGYEMPAQRITVNLAPADLPKESGR
FDLPIALGILAASGQIPTSPLRDYEFAGELSLSGELRPIRGALAMTYAMHRAACGAAKSRRAFILPLANADEAALVRDAH
VYPATTLTQVCAHFACHDGAGTLQRHLGAAPELPPDYPDFSDVKGQATVKRALEVAAAGCHSVLLVGPPGTGKSMLAARF
PGLLPAMTDEEALEAAAVQSLSGEFSAASWKTRPFRSPHHTSSGVALVGGGSVPHPGEISMAHRGVLFLDELPEFDRRVL
EVLREPMESGRVTISRAAHRADFPARFQLLAAMNGCPCGYHGHPGGQCRCPPDVISRYQGRISGPLLDRMDLLLSVNPLS
PEELEAPPDGESSSVIAARVQQAWAIQQARQGKSNQLMGTREIERYCRLDRAGKAVLRASMLKFHWSARAYHRILRVART
VADLDQSAAITEAHVSQAIQFRRALLDL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1057905 ACFJI2_RS00165 WP_377703242.1 44069..45595(-) (comM) [Pseudoduganella sp. UC29_71]
ATGAGCCTTGCCGTTCTGAGAAGCCGCGCGCTGGCGGGCATGGAAGCCCCGGAAGTCAGCGTGGAAGTCCACCTGGCCAA
CGGCCTCCCCGCCTTCGCCATGGTGGGCCTGCCGGAAACCGAAGTGAAGGAAGCGCGCGACCGCGTGCGCGCGGCCATCC
ACAACGCCGGCTACGAAATGCCGGCCCAGCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGATCTGCCGATCGCACTCGGCATCCTGGCCGCCTCCGGCCAGATTCCCACCTCCCCCTTGCGCGACTATGAATTCGC
CGGCGAACTCTCGCTGTCGGGCGAACTGCGCCCGATACGCGGCGCGCTGGCCATGACTTACGCCATGCACCGCGCCGCGT
GCGGCGCAGCCAAAAGCCGGCGCGCCTTCATCCTGCCGCTGGCCAACGCCGACGAGGCGGCGCTGGTGCGCGACGCGCAC
GTCTATCCCGCCACCACGCTGACGCAGGTGTGCGCCCACTTCGCCTGCCACGACGGTGCCGGCACGCTGCAGCGCCACCT
GGGCGCCGCGCCGGAACTCCCGCCCGACTACCCGGACTTCTCCGACGTCAAGGGCCAGGCCACCGTCAAACGCGCGCTGG
AAGTGGCGGCGGCCGGTTGCCACAGCGTGCTGCTGGTGGGGCCGCCGGGCACCGGCAAGAGCATGCTGGCGGCGCGCTTC
CCCGGCTTGCTGCCCGCCATGACGGACGAGGAAGCGCTGGAGGCAGCCGCCGTGCAGTCGCTCAGCGGGGAATTCAGCGC
CGCCAGCTGGAAGACCCGTCCCTTCAGGTCGCCGCACCACACCTCATCCGGCGTGGCGCTGGTGGGTGGCGGCAGCGTGC
CGCATCCCGGCGAAATCTCAATGGCGCACCGGGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGACCGGCGCGTACTG
GAAGTGCTGCGCGAGCCCATGGAGTCGGGGCGCGTCACCATTTCCAGGGCCGCGCACCGGGCCGACTTCCCGGCCCGCTT
CCAGCTGCTGGCGGCCATGAACGGCTGCCCCTGCGGCTACCACGGCCATCCCGGCGGGCAGTGCCGCTGCCCGCCCGACG
TCATCTCGCGCTACCAGGGCCGCATCTCCGGTCCGCTGCTGGACCGCATGGACCTGCTGCTCTCGGTCAACCCGCTCTCG
CCCGAGGAGCTGGAGGCGCCTCCGGACGGCGAAAGTTCGTCCGTCATCGCCGCGCGCGTGCAGCAAGCCTGGGCCATCCA
GCAGGCACGCCAGGGCAAGAGCAACCAGCTGATGGGCACGCGCGAGATCGAGCGCTATTGCAGGCTGGACCGGGCAGGCA
AAGCGGTGCTGCGCGCCAGCATGCTGAAGTTCCACTGGTCGGCGCGCGCTTATCACCGGATTTTGCGGGTGGCACGCACC
GTGGCGGACCTGGATCAGTCGGCCGCCATTACCGAGGCGCACGTAAGCCAGGCCATCCAGTTTCGCCGTGCCTTGCTCGA
TTTGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(199-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-502)

Subunit ChlI of Mg-chelatase (ChlI)

(21-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.254

99.803

0.531
  comM Vibrio cholerae strain A1552

51.186

99.606

0.51
  comM Glaesserella parasuis strain SC1401

50.296

99.803

0.502
  comM Haemophilus influenzae Rd KW20

50

100

0.502
  comM Legionella pneumophila str. Paris

49.02

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.02

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.643

99.213

0.443

Multiple sequence alignment